BQ623654

Overview
NameBQ623654
Unique NameBQ623654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.422e-38
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.231e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  200 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.607e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   42 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.607e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  193 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.607e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  193 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.607e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  192 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  191 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  191 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  191 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 GGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
The following BLAST results are available for this feature:
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_PEA9.422e-3897.33Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY1.231e-3797.33Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC1.607e-3797.33Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC1.607e-3797.33Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP1.607e-3797.33Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC1.607e-3797.33Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC2.099e-3797.33Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC2.099e-3797.33Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC2.099e-3797.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY2.099e-3796.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00745 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00745 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623654 ID=BQ623654; Name=BQ623654; organism=Citrus sinensis; type=EST; length=304bp
CAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGC
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