BQ623654

Overview
NameBQ623654
Unique NameBQ623654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  194 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 GGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  192 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  189 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.741e-37
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 224
            GGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  188 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  193 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  193 GGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  193 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.580e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  171 GGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.676e-37
Identity = 71/75 (94.67%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  191 GGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB28_PEA2.099e-3796.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP2.099e-3797.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL2.741e-3796.00Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN2.741e-3797.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE2.741e-3797.30Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC3.580e-3796.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.580e-3796.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL3.580e-3797.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN3.580e-3797.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB29_MAIZE4.676e-3794.67Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00745 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00745 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623654 ID=BQ623654; Name=BQ623654; organism=Citrus sinensis; type=EST; length=304bp
CAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGC
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