BQ623654

Overview
NameBQ623654
Unique NameBQ623654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.676e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 GGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.107e-37
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  193 GGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.107e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  190 GGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.042e-36
Identity = 70/75 (93.33%), Postives = 75/75 (100.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 GGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.361e-36
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  190 GGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.361e-36
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 GGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.361e-36
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 GGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.031e-36
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  163 GGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.959e-36
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  190 GGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
[Close]
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.170e-36
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 3 
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  191 GGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_SINAL4.676e-3797.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_TOBAC6.107e-3796.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU6.107e-3797.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY1.042e-3693.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB48_MAIZE1.361e-3694.67Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH1.361e-3694.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.361e-3694.67Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_SOLLC3.031e-3693.33Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI3.959e-3693.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE5.170e-3693.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00745 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00745 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623654 ID=BQ623654; Name=BQ623654; organism=Citrus sinensis; type=EST; length=304bp
CAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGC
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