BQ623654

Overview
NameBQ623654
Unique NameBQ623654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.377e-35
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   50 GGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.750e-35
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  189 GGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.750e-35
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  189 GGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.837e-34
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            G +FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   76 GDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.837e-34
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  192 GGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.408e-33
Identity = 64/75 (85.33%), Postives = 73/75 (97.33%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            GG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  191 GGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.655e-32
Identity = 66/74 (89.19%), Postives = 67/74 (90.54%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 224
            GGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  194 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.008e-31
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 224
            G  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  191 GQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.903e-30
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 224
            G  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  194 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.589e-29
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 221
            G SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  182 GESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of BQ623654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB21_RAPSA4.377e-3593.33Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB23_ORYSJ9.750e-3589.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.750e-3589.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PINSY2.837e-3492.00Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_WHEAT2.837e-3490.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.408e-3385.33Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_PHYPA2.655e-3289.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOLLC5.008e-3186.49Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.903e-3085.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO3.589e-2983.56Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00745 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00745 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623654 ID=BQ623654; Name=BQ623654; organism=Citrus sinensis; type=EST; length=304bp
CAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGC
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