BQ623656

Overview
NameBQ623656
Unique NameBQ623656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 63/156 (40.38%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  160 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL-TFLL 624
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +              K    +LQT   W +              +A+  L S+ TF L
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSWDQFKGGFFVGACGSAGFAFICLSSIPTFAL 147          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  154 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E             V++ + CL  YG+ SF              G+    D L++A+GW++         + G   AYFLL +L
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQ-------------GKAASNDPLKSAEGWSQFAAGFFIGGMGGAFVAYFLLENL 147          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_ANAVT (Photosystem I reaction center subunit XI OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaL PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.477e-24
Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  124 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P     +T+      PD  Q+ +GW           I G + AYFL  +   +
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLSLSLYA----NSNPPKALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFLTSNFALI 167          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_MASLA (Photosystem I reaction center subunit XI OS=Mastigocladus laminosus GN=psaL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 63/175 (36.00%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   97 SKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            SK SP        S+    +V+ P   DP IG LETPI SSPL+ W++ NLPAYR  ++   RG+EVG+AHG+ + GPF K GPLRNT              ++IL+  LT+Y     N   P     +        P+  Q+++GW           I G + AYFL  +L  +
Sbjct:    8 SKNSP--------SDPRNREVVFPAYRDPQIGDLETPINSSPLVKWFIGNLPAYRPGITTFRRGLEVGMAHGYWIFGPFAKLGPLRNTVNANLAGLLSALGLIIILTGALTLYA----NSKPPKPVKSV---ATPNPPEAFQSSEGWNNFASAFLIGGIGGAVVAYFLTSNLELI 167          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  124 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            K + S+    +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+             VV+L+  L++Y     N   P   P +T+       D   + + W           I G + AYFL  +L
Sbjct:    9 KNLPSDPRNREVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTVP--NPPVDAFNSKESWNNFASSFLIGGIGGAVVAYFLTSNL 165          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  175 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 600
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFLL GPF   GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++         + G  +A++L
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGGAFFAFYL 146          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  175 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTF 618
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE             + IL+I L++Y  AS   G+P      TLT     P+ L T+ GW +           GVI+AY L  +L F
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKPIE----TLT-TPDVPEDLGTSVGWGEFANGFFIGGSGGVIFAYLLCQALYF 148          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  175 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 600
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++         + G  +A++L
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGGAFFAFYL 145          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  175 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN +             + +L++ L++YG          + P  TLT     P+ L T +GW++           G + AY L ++L  +
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYGSVGV------STPTATLT-TPNPPENLGTKEGWSEFAAGFLIGGCGGALVAYGLCIALPMM 149          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.534e-17
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  160 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+             V IL+    +Y        +P+  P       +  P  L T  GW             G ++A+ L  +L
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLYTAPG---KDPNVQPSDCTV--ENPPTDLFTRTGWTDFTSGFWLGGCGGAVFAWLLCGTL 183          
The following BLAST results are available for this feature:
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_THAPS1.452e-2440.38Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_MICAN1.897e-2438.56Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_ANAVT2.477e-2434.34Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_MASLA4.226e-2436.00Photosystem I reaction center subunit XI OS=Mastig... [more]
PSAL_NOSP72.097e-2335.58Photosystem I reaction center subunit XI OS=Nostoc... [more]
PSAL_SYNE76.746e-2240.14Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA57.459e-2141.89Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP61.662e-2038.73Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_SYNP22.653e-1833.56Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PROM48.534e-1733.11Photosystem I reaction center subunit XI OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00747 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00747 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623656 ID=BQ623656; Name=BQ623656; organism=Citrus sinensis; type=EST; length=633bp
ATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCCT
GCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCCA
AGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAACT
TACCAAGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGA
GACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTAC
CAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGG
TTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATT
GAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCC
TTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTC
AATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAA
GAAGGAGCCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTG
GAGGATTCTTCTTTGGTGGAATTTCTGGGGTCATTTGGGCTTATTTCCTG
CTTATGTCCTTAACCTTCTTACTTCGTTAAATA
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