BQ623666

Overview
NameBQ623666
Unique NameBQ623666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.038e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP              +D ++  + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.038e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP              +D +   + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  188 YPGGSFDPL----------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.038e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  189 YPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 49/112 (43.75%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   25 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 360
            +++ LMG AE  R    AN GS G    L    Y GG  DP               D  +  + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP  N    S
Sbjct:  149 VQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct:  169 YPGGSFDPL----------ALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + ++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  190 YPGGSFDPL----------GLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  186 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  160 IWACQVVLMGFVEGYR----VGGGPLGE----GLDPIYPGGAFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++  ++ LMGF E  R       G +G     G +  Y GG+ DP               D  S  + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct:  160 IWATQVVLMGFVEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = 1
Query:    4 DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 336
            D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + TG GP  NL  HLADP
Sbjct:  149 DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB25_TOBAC1.038e-1349.33Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_APIGR1.038e-1350.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ1.038e-1349.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_DUNTE1.355e-1343.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SOYBN1.355e-1349.33Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP1.355e-1349.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE1.355e-1349.33Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI1.355e-1340.18Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB215_PEA1.355e-1341.07Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB12_SOLLC1.355e-1336.22Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00757 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00757 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623666 ID=BQ623666; Name=BQ623666; organism=Citrus sinensis; type=EST; length=437bp
GCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGC
CGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGC
AATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCT
TACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAA
GTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAA
TGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGG
CCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGT
TTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTT
GGAATTATATATTCCAAGCCTTGTCATCCCCCACTCT
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