BQ623666

Overview
NameBQ623666
Unique NameBQ623666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct:  202 YPGGNFDPL----------GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct:  192 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct:  160 IWACQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP              +D ++  + K+KE KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct:  189 YPGGSFDPL----------GLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.943e-13
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 1
Query:   28 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++ LMG  E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  164 QVVLMGLIEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.149e-13
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct:  187 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.725e-13
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL-GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++  ++ LMG  E  R       G++G     G +  L GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  161 IWACQVVLMGLIEGYR----VGGGTLGE----GLDPLLPGGAFDPL----------GLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   22 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL--GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 357
            V E+ L+G AE+ R  +            L FE  L  GG  DP              KD +     K+KE+KNGRLAM A+LG+F+Q  VTG GP +NL  HL+DP  NN+LT
Sbjct:  176 VAEVVLLGGAEYYRITNG-----------LDFEDKLHPGGPFDPL----------GLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:  192 YPGGSFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256          
The following BLAST results are available for this feature:
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2A_PINSY1.770e-1349.33Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA1.770e-1349.33Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_SOLLC2.311e-1339.29Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB22_PETSP2.311e-1348.00Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_MAIZE3.019e-1349.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC3.943e-1340.74Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOYBN5.149e-1349.33Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_PINTH6.725e-1339.29Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_ARATH8.783e-1341.23Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_PHYPA1.147e-1249.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00757 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00757 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623666 ID=BQ623666; Name=BQ623666; organism=Citrus sinensis; type=EST; length=437bp
GCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGC
CGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGC
AATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCT
TACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAA
GTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAA
TGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGG
CCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGT
TTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTT
GGAATTATATATTCCAAGCCTTGTCATCCCCCACTCT
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