BQ623666

Overview
NameBQ623666
Unique NameBQ623666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.147e-12
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            ++  ++ LMG  E  R       G +G     G +  Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct:  159 IWATQVVLMGLIEGYR----VGGGPLGE----GLDPLYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  193 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct:   87 DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+ADPVNNN
Sbjct:  190 YPGGSFDPL----------GLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  133 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct:  182 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  133 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            G G+  Y             D  +  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct:  185 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP              +  ++  + K+KE+KNGRLAM ++ G+FV  +VTG GP +NL DHLADPVNNN
Sbjct:  152 YPGGSFDPL----------GLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  193 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            D  +  + K+KE+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P  NN
Sbjct:  211 DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.338e-12
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  124 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 348
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP  NN
Sbjct:  189 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  193 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 360
            D  +  + K+KE+KNGRLAM +  G+FVQ +VTG GP QNL DHLADP  NN   +
Sbjct:  193 DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAA 248          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1
Query:   13 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 351
            T+  +E   + F EH+R  +  +            +KY GG+ DP              KD    ++ K+KE+KNGRLA+LAI+G+ V Q    G GP +NL  HLADP +NN+
Sbjct:  141 TILAIEFLAIAFVEHQRSMEKDSEK----------KKYPGGAFDPL----------GYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
The following BLAST results are available for this feature:
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_LEMGI1.147e-1238.39Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.498e-1259.62Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_WHEAT1.498e-1246.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOLLC2.556e-1245.83Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.556e-1245.83Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_PEA2.556e-1248.00Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNSA3.338e-1259.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU3.338e-1248.00Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_CHLMO4.359e-1255.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB11_SOLLC1.656e-1135.96Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00757 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00757 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623666 ID=BQ623666; Name=BQ623666; organism=Citrus sinensis; type=EST; length=437bp
GCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGC
CGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGC
AATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCT
TACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAA
GTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAA
TGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGG
CCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGT
TTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTT
GGAATTATATATTCCAAGCCTTGTCATCCCCCACTCT
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