BQ623666

Overview
NameBQ623666
Unique NameBQ623666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.163e-11
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 1
Query:   13 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 351
            T+  +E   + FAE +R  +  +P           +KY GG+ DP              KD    ++ KLKE+KNGRLAMLA +G+ V Q    G GP +NL  HLADP +NN+
Sbjct:  140 TILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGAFDPL----------GFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 1
Query:   16 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 363
            +   ++ LMG  E  R  + A PG  G         Y GG  DP               D  +  + K+KE+KNGRLAM  +LG++ Q +VTG GP +N L HL DP  +N LT+L
Sbjct:   14 ILATQVLLMGAVEGYRAGNTA-PGQFGEDLD---RLYPGGPFDPL----------GLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAL 115          
The following BLAST results are available for this feature:
BLAST of BQ623666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB121_HORVU2.163e-1137.72Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB21_EUGGR8.221e-1137.07Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00757 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00757 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623666 ID=BQ623666; Name=BQ623666; organism=Citrus sinensis; type=EST; length=437bp
GCAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGC
CGAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGC
AATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCT
TACCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAA
GTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGCAA
TGTTGGCAATCTTGGGTTACTTTGTTCAAGGTCTTGTTACAGGAGTTGGG
CCTTACCAGAACCTATTGGATCACTTGGCTGATCCTGTCAACAACAATGT
TTTGACTAGCCTCAAGTTTCACTGAGAGAGAAATTTCTTGGTCATTGCTT
GGAATTATATATTCCAAGCCTTGTCATCCCCCACTCT
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