BQ623668

Overview
NameBQ623668
Unique NameBQ623668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.886e-54
Identity = 104/133 (78.20%), Postives = 112/133 (84.21%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEG+ L        G   +   +KD+GPK
Sbjct:   28 RKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMG-EEQICGIKDVGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 6.629e-54
Identity = 105/134 (78.36%), Postives = 112/134 (83.58%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPKS 403
            RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+K GF EG+ L        G   +   +KDIG K+
Sbjct:   28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMG-EEQICAVKDIGTKT 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 8.658e-54
Identity = 105/134 (78.36%), Postives = 112/134 (83.58%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPKS 403
            RK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL Q+K GF EG+ L        G   +   +KDIG KS
Sbjct:   28 RKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMG-EEQICAVKDIGTKS 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.929e-53
Identity = 104/133 (78.20%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RK G+IVIK R CKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LLTQ+KDGF EG+ L        G   +   LKDIGPK
Sbjct:   28 RKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMG-EEQICALKDIGPK 159          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.250e-52
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN D+PHVNRT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDETL+ Q+K+GF  G+ L        G   +   LKD+GPK
Sbjct:   29 RKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMG-EEQICALKDVGPK 160          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.250e-52
Identity = 104/135 (77.04%), Postives = 114/135 (84.44%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDI-VPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPKS 403
            RKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLE++ VPSSHN DVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LLTQ+KDGFAEG+ L        G   +   LKDIG K+
Sbjct:   28 RKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMG-EEQICALKDIGGKN 161          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.751e-52
Identity = 100/133 (75.19%), Postives = 111/133 (83.46%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSVPLKDIGPK 400
            RK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHN DVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LLTQLK+GF EG+ +        G   +   LK++GPK
Sbjct:   27 RKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMG-EEQMCALKEVGPK 158          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.382e-51
Identity = 100/134 (74.63%), Postives = 112/134 (83.58%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGLGFDCHVFNGVRSRSV-PLKDIGPK 400
            RKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHN DVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+TLL Q+K GF +G+ L     V + +    +  LKDIGPK
Sbjct:   27 RKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVS--VMSAMGEEQINALKDIGPK 158          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.657e-48
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RK+G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHN DVPHVNR DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GF  G+ L
Sbjct:   28 RKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDL 137          

HSP 2 Score: 23.483 bits (49), Expect = 3.657e-48
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            GKDL+L+VM +MG
Sbjct:  134 GKDLILSVMCAMG 146          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.970e-47
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHN DVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L  Q++ GF EG+ +
Sbjct:   27 RKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDI 136          

HSP 2 Score: 25.0238 bits (53), Expect = 3.970e-47
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            GKD+V++VMSSMG
Sbjct:  133 GKDIVVSVMSSMG 145          
The following BLAST results are available for this feature:
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
IF5A1_NICPL3.886e-5478.20Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLLC6.629e-5478.36Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU8.658e-5478.36Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A_SENVE1.929e-5378.20Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MAIZE1.250e-5275.19Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_MEDSA1.250e-5277.04Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_ARATH4.751e-5275.19Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A1_ARATH1.382e-5174.63Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A_DIACA3.657e-4879.09Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH3.970e-4778.18Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00759 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623668 ID=BQ623668; Name=BQ623668; organism=Citrus sinensis; type=EST; length=449bp
CCGTAAGAATGGCTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTGG
AAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTT
GTTGGAATTGATATCTTCAGTGGAAAGAAGTTGGAAGATATTGTCCCCTC
TTCTCATAACTCTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGA
TTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAAC
ACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCT
CAAGGACGGTTTTGCTGAGGGGGAAGGACTTGGTTTTGACTGTCATGTCT
TCAATGGGGTGAGGAGCAGATCTGTGCCCCTCAAGGATATTGGCCCCAAG
TCGTAGTTGCGCAATATGTGATTATCTGCTGTGTCTGGGTGCATCTGAT
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