BQ623668

Overview
NameBQ623668
Unique NameBQ623668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:166..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.938e-37
Identity = 70/110 (63.64%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++++KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  G+ L
Sbjct:   28 RKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKEL 136          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.938e-37
Identity = 70/110 (63.64%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++++KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  G+ L
Sbjct:   28 RKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKEL 136          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.653e-35
Identity = 66/110 (60.00%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L  ++++GF EG+ L
Sbjct:   28 RKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDL 135          

HSP 2 Score: 24.6386 bits (52), Expect = 4.653e-35
Identity = 9/13 (69.23%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            GKDL++TV+S+MG
Sbjct:  132 GKDLIITVVSAMG 144          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.745e-34
Identity = 66/110 (60.00%), Postives = 90/110 (81.82%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L  ++++GF EG  L
Sbjct:   28 RKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDL 135          

HSP 2 Score: 23.483 bits (49), Expect = 1.745e-34
Identity = 8/13 (61.54%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            G+DL++TV+S+MG
Sbjct:  132 GRDLIITVVSAMG 144          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.021e-34
Identity = 66/110 (60.00%), Postives = 92/110 (83.64%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++VIK RPCK+V++STSKTGKHGHAK H V IDIF+GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +L+  F EG+ L
Sbjct:   26 RKNGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDL 133          

HSP 2 Score: 23.8682 bits (50), Expect = 5.021e-34
Identity = 8/13 (61.54%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            GKDL++T++S+MG
Sbjct:  130 GKDLIVTIISAMG 142          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 283
            RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E
Sbjct:   26 RKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE 118          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 283
            RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E
Sbjct:   26 RKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE 118          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 283
            RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E
Sbjct:   26 RKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE 118          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 7.620e-34
Identity = 64/91 (70.33%), Postives = 80/91 (87.91%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 274
            RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP
Sbjct:   26 RKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP 115          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.445e-33
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGEGL 331
            RKNG++VIKGRPCK+V++STSKTGKHGHAK H V +DIF+GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  E L   ++  F EG+ L
Sbjct:   27 RKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDL 134          

HSP 2 Score: 23.0978 bits (48), Expect = 1.445e-33
Identity = 8/13 (61.54%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  321 GKDLVLTVMSSMG 359
            GKDL++T++S+MG
Sbjct:  131 GKDLMVTIISAMG 143          
The following BLAST results are available for this feature:
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
IF5A_SPOFR1.938e-3763.64Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX1.938e-3763.64Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO4.653e-3560.00Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO1.745e-3460.00Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_CANAL5.021e-3460.00Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A2_PONAB7.620e-3469.15Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE7.620e-3469.15Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN7.620e-3469.15Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK7.620e-3470.33Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_YEAST1.445e-3360.00Eukaryotic translation initiation factor 5A-1 OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00759 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623668 ID=BQ623668; Name=BQ623668; organism=Citrus sinensis; type=EST; length=449bp
CCGTAAGAATGGCTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTGG
AAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTT
GTTGGAATTGATATCTTCAGTGGAAAGAAGTTGGAAGATATTGTCCCCTC
TTCTCATAACTCTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGA
TTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAAC
ACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCT
CAAGGACGGTTTTGCTGAGGGGGAAGGACTTGGTTTTGACTGTCATGTCT
TCAATGGGGTGAGGAGCAGATCTGTGCCCCTCAAGGATATTGGCCCCAAG
TCGTAGTTGCGCAATATGTGATTATCTGCTGTGTCTGGGTGCATCTGAT
back to top