BQ623668

Overview
NameBQ623668
Unique NameBQ623668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.651e-29
Identity = 65/110 (59.09%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGEG 328
            RKN +++IKGRPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + EG
Sbjct:   30 RKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEG 137          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 9.639e-29
Identity = 59/106 (55.66%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE---TLLTQLKDG 310
            RKNG++VIKG PCK+V++STSKTGKHGHAK +   IDIF+GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+    +   LK+G
Sbjct:   31 RKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDDIGKEITQMLKEG 135          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.050e-27
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGEG 328
            RKN +++I+GRPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + EG
Sbjct:   30 RKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEG 137          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.684e-13
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   14 YIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            +IVI G PCKVVEV  SKTGKHG AK   VGI  F G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + ++L +G
Sbjct:   16 FIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG 113          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.806e-12
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 2
Query:   14 YIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            Y+VI G PC+VVE+S +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD  ++ +++ G
Sbjct:   16 YVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPG 113          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            +   +I+I G PCK+VE+S +KTGKHG AK H V I + SG K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L ++L+ G
Sbjct:   12 KPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPG 113          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            +   +I+I G PC++VE+S +KTGKHG AK H V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  +LK G
Sbjct:   12 KPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPG 113          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: YE034_YEAST (Putative uncharacterized protein YEL034C-A OS=Saccharomyces cerevisiae GN=YEL034C-A PE=5 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = -2
Query:    2 WEPQIILGVPIFSQQTHKSILRNINQLIVGTVDMGNIRVMRRGDNIFQLLSTEDINSNKVALSMTVLSSLGGGDFHNLAGTAFDDDVAILT 274
            W   IIL V +   Q  ++++ N+ QL+  ++D  N  V+ R   IFQLL++EDIN N++  S+TVL+SL  G   NL  +  DD+  +L+
Sbjct:   65 WSLDIILSVTVHVHQRQETVI-NVQQLVFVSLDNWNFHVVSRWRQIFQLLTSEDINGNQMDFSVTVLTSLRSGHVDNLTWSTLDDNETVLS 154          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 2
Query:   14 YIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            Y++I G PC+VVE++ +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++++++ G
Sbjct:   16 YVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPG 113          
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_METKA (Translation initiation factor 5A OS=Methanopyrus kandleri GN=eif5a PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 2
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            +K  YI+I   PCK+VE +TS  GKHG AK   V + +F GKK     P     DVP + R   Q++    D  V L+        +++ P DE L +QL+ G
Sbjct:   14 KKGKYIMIDDEPCKIVEYTTSSPGKHGSAKARIVAVGLFDGKKRTLTKPVDAKVDVPVIERKTAQVVSDMGD-TVQLMDMETYETFEVQKPEDEELASQLEPG 115          
The following BLAST results are available for this feature:
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
IF5A2_CAEEL5.651e-2959.09Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A_DICDI9.639e-2955.66Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A1_CAEEL4.050e-2756.36Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD9.684e-1338.38Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_SULTO4.806e-1236.36Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_IGNH48.198e-1235.92Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_STAMF2.385e-1135.92Translation initiation factor 5A OS=Staphylothermu... [more]
YE034_YEAST4.069e-1138.46Putative uncharacterized protein YEL034C-A OS=Sacc... [more]
IF5A_SULAC4.069e-1133.33Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_METKA4.069e-1136.89Translation initiation factor 5A OS=Methanopyrus k... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00759 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623668 ID=BQ623668; Name=BQ623668; organism=Citrus sinensis; type=EST; length=449bp
CCGTAAGAATGGCTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTGG
AAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTT
GTTGGAATTGATATCTTCAGTGGAAAGAAGTTGGAAGATATTGTCCCCTC
TTCTCATAACTCTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGA
TTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAAC
ACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCT
CAAGGACGGTTTTGCTGAGGGGGAAGGACTTGGTTTTGACTGTCATGTCT
TCAATGGGGTGAGGAGCAGATCTGTGCCCCTCAAGGATATTGGCCCCAAG
TCGTAGTTGCGCAATATGTGATTATCTGCTGTGTCTGGGTGCATCTGAT
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