BQ623668

Overview
NameBQ623668
Unique NameBQ623668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_HYPBU (Translation initiation factor 5A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 2 
Query:   14 YIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 310
            YIVI G PC++VE+S +KTGKHG AK H V + +FSG K     P     +VP +++   Q+I    D  V ++        ++  P DE L ++L+ G
Sbjct:   16 YIVIDGEPCRIVEMSKAKTGKHGSAKAHVVAVCLFSGNKKTLTAPVDARVEVPIIDKRIGQVIADMGD-MVQIMDMETYETFEVEKPKDEDLKSKLQPG 113
[Close]
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:    2 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNSDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLK 304
            ++  YIVI G PC+VVEV+ +KTGKHG AK + + + IF+G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E + +++K
Sbjct:   12 KEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK 111
The following BLAST results are available for this feature:
BLAST of BQ623668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
IF5A_HYPBU5.314e-1137.37Translation initiation factor 5A OS=Hyperthermus b... [more]
IF5A_METS56.940e-1134.65Translation initiation factor 5A OS=Metallosphaera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00759 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00759 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623668 ID=BQ623668; Name=BQ623668; organism=Citrus sinensis; type=EST; length=449bp
CCGTAAGAATGGCTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTGG
AAGTCTCCACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTT
GTTGGAATTGATATCTTCAGTGGAAAGAAGTTGGAAGATATTGTCCCCTC
TTCTCATAACTCTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGA
TTGATATTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAAC
ACCAAGGATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCT
CAAGGACGGTTTTGCTGAGGGGGAAGGACTTGGTTTTGACTGTCATGTCT
TCAATGGGGTGAGGAGCAGATCTGTGCCCCTCAAGGATATTGGCCCCAAG
TCGTAGTTGCGCAATATGTGATTATCTGCTGTGTCTGGGTGCATCTGAT
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