BQ623670

Overview
NameBQ623670
Unique NameBQ623670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:603..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.180e-46
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  172 VEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.154e-46
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+ GGPLGE  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  171 VEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.085e-46
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 VEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  171 VEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.253e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  170 VEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.209e-45
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  143 VEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.061e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 VEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  172 VEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.061e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 3
Query:    3 VEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  172 VEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.592e-45
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  171 IEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.998e-45
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  171 VEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.023e-44
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 3
Query:    3 VEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 287
            VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  171 VEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of BQ623670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB21_WHEAT3.180e-4690.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI4.154e-4689.47Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_SINAL7.085e-4692.71Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB48_MAIZE9.253e-4690.53Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB25_SOLLC1.209e-4588.42Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_ARATH2.061e-4590.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.061e-4590.63Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_TOBAC4.592e-4587.37Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC5.998e-4587.37Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP1.023e-4487.37Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00761 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00761 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623670 ID=BQ623670; Name=BQ623670; organism=Citrus sinensis; type=EST; length=398bp
CCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGAC
CCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCC
GGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGG
CTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAG
GGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAA
TGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTG
ATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGT
GAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTT
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