BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 67/175 (38.29%), Postives = 116/175 (66.29%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 535
            + +GLLK+AIR+ +PV+F E+ LLY     ++  +++  + L + KA++ R G D+TI  +S++    L+AA++L  +G   E+I++ S++PLD  TI+ SVRKT++++ VEE     G+GA + A+++E+ F YLDAP++ ++  DVP PY+  LE + V Q   I++A +  C
Sbjct:  153 NGKGLLKSAIRNDNPVIFFEHVLLYN----LNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMC 323          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32
Identity = 70/173 (40.46%), Postives = 108/173 (62.43%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            D +GLL  AIRD DPV+F E++ LYG    +  EV + ++ +P G+A I R+GKDV+I  +  +V  +L+AA  LAKEGI AE+++LR++ PLD  T+  SV  T RLV V+E  P+  +  +I A V +++F  L A +E +     P+P++  LE + +P    I  AA++
Sbjct:  163 DTKGLLIQAIRDNDPVIFCEHKNLYG----LEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEAEIVDLRTLSPLDMDTVLESVENTGRLVVVDEASPRCNIATDISAQVAQQAFGALKAGIEMVCPPHTPVPFSPTLEDLYIPSAAQIAAAARK 331          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31
Identity = 71/172 (41.28%), Postives = 111/172 (64.53%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            +A+GLLK+AIRD +PVVF E+ LLY     +  E+ +  + +P+ KA++ R+GKD+TI  +S++     +A  +L  +G   EV++L S++PLD  +I+ SV+KT+R++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   I+ A K
Sbjct:  153 NAKGLLKSAIRDNNPVVFFEHVLLYN----LQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 71/172 (41.28%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            +A+GLLKAAIRD +PV+FLE+ LLY     +  E+    + LP+ KA++ REG DVTI  +S+++   ++A + L  +G++ EVI+L S++P+D  T+  SV KT++ + VEE     G+ AE+ A +   +F  LDAP+ R++  DVP PY   LE+  + Q   IV A K
Sbjct:  154 NAKGLLKAAIRDNNPVLFLEHVLLYN----LKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVK 321          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.766e-31
Identity = 78/174 (44.83%), Postives = 108/174 (62.07%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 532
            DA+GLLKAAIRD DPVVFLE + LY     V  EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++ +P V  I+ AAKRA
Sbjct:  153 DAKGLLKAAIRDEDPVVFLEPKRLYRS---VKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ--DKLYLPTVTRILNAAKRA 321          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.719e-31
Identity = 73/172 (42.44%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            +A+GLLK+AIRD +PVVF E+ LLY     +  E+    + LP+ K +  R+GKD+TI  +S++    ++A   L KEG   EVI+L S++PLD  +I+ SV+KT++++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   IV + K
Sbjct:  153 NAKGLLKSAIRDNNPVVFFEHVLLYN----LQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.051e-30
Identity = 71/168 (42.26%), Postives = 104/168 (61.90%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 514
            DA+GLL AAI D DPV F E++  Y     +  EV +  + +P+GKA I+REG DVT+ A  K V  +L+AA  L++ GI AEV++ RS+ PLD   I  S+ KTNRL+ ++E  P+  +  +I A V ++ F  LDAP++RI     P+P++  LE   +P  + IV
Sbjct:  166 DAKGLLLAAIEDNDPVFFFEDKTSYN----MKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIV 329          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 75/173 (43.35%), Postives = 112/173 (64.74%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 529
            DA+GLL +AIRD DPVVFLE+  LY  SF    EV +  + + +GKA ++REG D++I  +  +V  SLKAA+ L K+GISAEV++LR++ PLD  TI ASV KT R + V+E   Q G+ A + A + + +   L+APV R+A  D   P+ +  E + +P  +D++  A++
Sbjct:  153 DAKGLLISAIRDNDPVVFLEHMKLY-RSF--RQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPLDIDTIIASVEKTGRAIVVQEAQKQAGIAANVVAEINDRAILSLEAPVLRVAAPDTVFPF-SQAESVWLPNHKDVLETARK 321          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30
Identity = 74/172 (43.02%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++I+  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  153 DAKGLLISSIQSNDPVVYLEHMKLY-RSF--REEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.793e-30
Identity = 74/172 (43.02%), Postives = 112/172 (65.12%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++I+  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  153 DAKGLLISSIQSNDPVVYLEHMKLY-RSF--REEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ODPB_CHAGL2.502e-3238.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH4.268e-3240.46Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_PORPU1.242e-3141.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.118e-3141.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET82.766e-3144.832-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_PORYE4.719e-3142.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU1.051e-3042.26Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_BACSU1.373e-3043.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES1.793e-3043.02Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ1.793e-3043.02Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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