BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            DA+GLL ++IR  DPVV+LE+  LY  SF    EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  153 DAKGLLISSIRSNDPVVYLEHMKLY-RSF--REEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.342e-30
Identity = 77/174 (44.25%), Postives = 107/174 (61.49%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 532
            DA+GLLKAAIRD DPVVFLE + LY     V  EV +  + L IGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++ +P V  I+ AAKRA
Sbjct:  153 DAKGLLKAAIRDEDPVVFLEPKRLYRS---VKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ--DKLYLPTVTRILNAAKRA 321          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 73/174 (41.95%), Postives = 109/174 (62.64%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVP-MPYAANLERMAVPQVEDIVRAAKR 529
            DA+GLLKAA+RD DPV+F E++  Y     +  EV    + LPIGKA ++REG D+T+  +   V  +L+AAE L K+GISA V++LR++ PLD+  I  +  KT +++ V E   +  + +E+ A + E     LDAP++R+AG D+P MPYA  +E+  +    D V AA R
Sbjct:  153 DAKGLLKAAVRDEDPVLFFEHKRAYRL---IKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGISAHVVDLRTVYPLDKEAIIEAASKTGKVLLVTEDTKEGSIMSEVAAIISEHCLFDLDAPIKRLAGPDIPAMPYAPTMEKYFMVN-PDKVEAAMR 322          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.217e-30
Identity = 69/172 (40.12%), Postives = 110/172 (63.95%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 526
            +A+GLLK+AIRD +PV+F E+ LLY     +  E+ +  + LP+ KA++ R+G DVTI  +S++    ++A   L  +G + EVI+L S++PLD ++I  S+ KT++L+ VEE     G+GAEI A + +  F +LDAP+ R++  D+P PY   LE+  V   + I+ A K
Sbjct:  153 NAKGLLKSAIRDNNPVIFFEHVLLYN----LKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVK 320          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ODPB_STAAW2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC2.342e-3044.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET22.342e-3044.252-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU3.059e-3041.952-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_GRATL5.217e-3040.12Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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