BQ623671

Overview
NameBQ623671
Unique NameBQ623671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:661..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 67/166 (40.36%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 469
            DA+GLL A I + DPV+FLE + LY   F      PV+       ++V D  + +P+ KA I R G  +T+  +  +V ++  AA+   + G+ AE+I+LRS+ PLD  TI ASV+KT R V   E     G GAE+ + V E  F +L+AP+ER+ G D P P+A
Sbjct:  166 DAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 60/153 (39.22%), Postives = 91/153 (59.48%), Query Frame = 2
Query:   14 ARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 466
            A+GLL + I D +P +F E ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G+S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  221 AKGLLLSCIEDKNPCIFFEPKILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 58/155 (37.42%), Postives = 87/155 (56.13%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 469
            D +GL  AAI  PDPV+F E + LY        E+    + +PIG+A +  EG ++TI ++   +   ++L  +  L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E        AEI  SV EE F+YL    +R+ G D+ +P A
Sbjct:  155 DTKGLFLAAIESPDPVIFFEPKKLYRA---FRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 2
Query:   14 ARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 466
            A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  221 AKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 2
Query:   14 ARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 466
            A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  219 AKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 2
Query:   14 ARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 466
            A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  219 AKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 58/155 (37.42%), Postives = 87/155 (56.13%), Query Frame = 2
Query:   11 DARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 469
            D +GL  AA+  PDPVVF E + LY        E+    + +PIG+A +  +G ++TI ++   +   +++     L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E         EI ASV EE FSYL A  +R+ G D+ +P A
Sbjct:  156 DTKGLFLAAVESPDPVVFFEPKKLYRA---FRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 2
Query:   23 LLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 472
            +LK A+    P+      + Y         +      LPIG+A++ REG D+T+ A   +V  ++KAAEILA+ GI A V+N R ++PLD   I    R+T RL+T+EE     G G+ +   ++ +  +  D  V+ I   DV + + A
Sbjct:  455 MLKTAVEHEGPIA-----VRYPRGTGTGCALDQDLVALPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLT--DVRVQLIGLPDVFIEHGA 597          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   77 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 511
            L Y     V   +L     LPIG+A++ REG DV I A    V  + +AA+ILA+ GI A VIN R ++PLDRS I  + R+   LVTVEE     G G+ +  ++ +     L  PV R+  AD    +A  A+L R A    E I
Sbjct:  464 LRYPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607          
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Match: DXS_PELTS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   23 LLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 382
            +L  A+  P P       + Y  S      + DS   +P+G+A++ R+G +VT+ A   +V L++KAAEILA  GI A VIN R ++PLD+  I    R+T  + T+EE   Q G G+ +
Sbjct:  456 MLYTALSHPGPAA-----VRYPRSAGTGCRMDDSFKIIPLGRAEVLRDGTEVTLLAVGSMVCLAVKAAEILAGHGIDAAVINARFVKPLDKECILRYARRTREVFTLEENVLQGGFGSAV 570          
The following BLAST results are available for this feature:
BLAST of BQ623671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ODBB_PSEAE1.245e-2340.362-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_HUMAN1.424e-1939.222-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE5.412e-1937.42Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BOVIN9.231e-1936.182-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT1.206e-1836.182-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE1.206e-1836.182-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCPN1.575e-1837.42Pyruvate dehydrogenase E1 component subunit beta O... [more]
DXS_DESAP8.087e-1532.671-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_THERP1.168e-1338.781-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_PELTS1.168e-1336.671-deoxy-D-xylulose-5-phosphate synthase OS=Pelotom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00762 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00762 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623671 ID=BQ623671; Name=BQ623671; organism=Citrus sinensis; type=EST; length=741bp
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAAAGC
TAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAAAAA
TTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGAATA
AGTGCTGAGGTTATCAATCTGCGGTCAATTAGGCCACTAGATAGATCCAC
AATCAATGCTTCTGTCAGAAAAACTAACAGACTGGTAACAGTTGAAGAAG
GGTTCCCTCAGCATGGAGTTGGTGCCGAAATCTGTGCATCCGTTATTGAG
GAAAGCTTCAGTTATCTTGATGCACCAGTTGAGAGAATTGCTGGAGCTGA
TGTTCCAATGCCATATGCAGCCAATCTTGAGAGAATGGCTGTCCCACAGG
TTGAAGATATTGTCCGAGCTGCCAAGAGAGCATGCTACAGATCTGTGCCA
ATGGCTGCTGCAGCATAAAAGAACTGATTCTGCCCTGAAGCTTTGTCAGA
TCCTGGAACAATAGAGGGATTGTACATTTTTCCCATTCTCAACACTTTTT
TGGGGGAATTGATCATGAAATAATTGGAGATTGGTGATGACAGCAGGAAA
TTTTGTGGCTCAGTTTTCTCTTGTTAATGTGGAAATCAACA
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