BQ623672

Overview
NameBQ623672
Unique NameBQ623672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:590..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.029e-44
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 53.1434 bits (126), Expect = 1.029e-44
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.029e-44
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 53.1434 bits (126), Expect = 1.029e-44
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  165 VLMGAVEGYRVAGGPLGEVVDPLYP 189
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.867e-44
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 50.0618 bits (118), Expect = 3.867e-44
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AG PLGEV DPLYP
Sbjct:  167 VLMGAVEGYRVAGEPLGEVVDPLYP 191
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.567e-44
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 53.5286 bits (127), Expect = 6.567e-44
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.454e-43
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

HSP 2 Score: 54.299 bits (129), Expect = 1.454e-43
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  157 ILMGAVEGYRIAGGPLGEVTDPIYP 181
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.473e-43
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  156 SFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

HSP 2 Score: 53.1434 bits (126), Expect = 2.473e-43
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  129 ILMGAVEGYRIAGGPLGEVVDPLYP 153
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.216e-43
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 52.373 bits (124), Expect = 3.216e-43
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYR+AGGPLGE+ DPLYP
Sbjct:  165 ILMGAVEGYRVAGGPLGEIVDPLYP 189
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.116e-43
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

HSP 2 Score: 51.6026 bits (122), Expect = 7.116e-43
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYR+AGGPLGEV DP+YP
Sbjct:  166 ILMGAVEGYRVAGGPLGEVEDPIYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.575e-42
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  192 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264

HSP 2 Score: 46.2098 bits (108), Expect = 1.575e-42
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG +EGYR+ GGPLGE  DPLYP
Sbjct:  165 VLMGLIEGYRVGGGPLGEGLDPLYP 189
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.539e-42
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  195 SFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267

HSP 2 Score: 49.2914 bits (116), Expect = 4.539e-42
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYR+AGGPLG V DPLYP
Sbjct:  168 LLMGAVEGYRVAGGPLGVVVDPLYP 192
The following BLAST results are available for this feature:
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB25_TOBAC1.029e-4494.52Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU1.029e-4495.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_NICPL3.867e-4494.52Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_MAIZE6.567e-4491.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN1.454e-4391.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA2.473e-4391.78Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_APIGR3.216e-4391.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU7.116e-4390.41Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_LEMGI1.575e-4294.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP4.539e-4290.41Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623672 ID=BQ623672; Name=BQ623672; organism=Citrus sinensis; type=EST; length=411bp
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCA
TGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATT
TATAAATGCTT
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