BQ623672

Overview
NameBQ623672
Unique NameBQ623672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:590..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.539e-42
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  194 SFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266

HSP 2 Score: 53.1434 bits (126), Expect = 4.539e-42
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGE+ DPLYP
Sbjct:  167 VLMGAVEGYRIAGGPLGEIVDPLYP 191
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.915e-42
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  192 SFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

HSP 2 Score: 45.0542 bits (105), Expect = 5.915e-42
Identity = 20/24 (83.33%), Postives = 21/24 (87.50%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLY 72
            VLMGAVEGY +AGG LGEV DPLY
Sbjct:  165 VLMGAVEGYHVAGGRLGEVVDPLY 188
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.915e-42
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

HSP 2 Score: 45.4394 bits (106), Expect = 5.915e-42
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  DP+YP
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDPIYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.309e-41
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 42.3578 bits (98), Expect = 1.309e-41
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAG-GPLGEVTDPLYP 75
            +LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  166 ILMGAVEGYRVAGEGPLGEAEDLLYP 191
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.708e-41
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  165 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 2 Score: 42.3578 bits (98), Expect = 1.708e-41
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  D +YP
Sbjct:  138 VLMGFVEGYRVGGGPLGEGLDKIYP 162
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.723e-41
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

HSP 2 Score: 46.2098 bits (108), Expect = 1.723e-41
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG +EGYR+ GGPLGE  DPLYP
Sbjct:   51 VLMGLIEGYRVGGGPLGEGLDPLYP 75
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.772e-41
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 42.3578 bits (98), Expect = 3.772e-41
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAG-GPLGEVTDPLYP 75
            +LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  167 ILMGAVEGYRVAGNGPLGEAEDLLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.772e-41
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 42.3578 bits (98), Expect = 3.772e-41
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAG-GPLGEVTDPLYP 75
            +LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  167 ILMGAVEGYRVAGNGPLGEAEDLLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.915e-41
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

HSP 2 Score: 42.3578 bits (98), Expect = 4.915e-41
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG +EGYR+ GGPLGE  D +YP
Sbjct:  166 VLMGLIEGYRVGGGPLGEGLDKIYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.345e-41
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 2 Score: 42.3578 bits (98), Expect = 8.345e-41
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  D +YP
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDKIYP 190
The following BLAST results are available for this feature:
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_WHEAT4.539e-4289.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE5.915e-4293.15Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_GOSHI5.915e-4294.52Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_SINAL1.309e-4195.89Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_SOLLC1.708e-4194.52Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY1.723e-4194.52Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_ARATH3.772e-4193.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.772e-4193.15Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_TOBAC4.915e-4194.52Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC8.345e-4193.15Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623672 ID=BQ623672; Name=BQ623672; organism=Citrus sinensis; type=EST; length=411bp
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCA
TGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATT
TATAAATGCTT
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