BQ623672

Overview
NameBQ623672
Unique NameBQ623672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:590..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.417e-40
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 42.3578 bits (98), Expect = 1.417e-40
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  D +YP
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDKIYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.846e-40
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 298
            +FDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  196 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267

HSP 2 Score: 54.299 bits (129), Expect = 1.846e-40
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AGGPLGEVTDP+YP
Sbjct:  169 VLMGAVEGYRVAGGPLGEVTDPIYP 193
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.320e-40
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  193 AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

HSP 2 Score: 46.2098 bits (108), Expect = 5.320e-40
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  DPLYP
Sbjct:  166 VLMGFVEGYRVGGGPLGEGLDPLYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.933e-40
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 41.9726 bits (97), Expect = 6.933e-40
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  D +YP
Sbjct:  164 VLMGFVEGYRVGGGPLGEGLDKVYP 188
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.933e-40
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

HSP 2 Score: 41.9726 bits (97), Expect = 6.933e-40
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGPLGE  D +YP
Sbjct:  164 VLMGFVEGYRVGGGPLGEGLDKVYP 188
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.031e-40
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 40.0466 bits (92), Expect = 9.031e-40
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG +EGYR+ GG LGE  DPL P
Sbjct:  167 VLMGLIEGYRVGGGTLGEGLDPLLP 191
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.198e-39
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 42.3578 bits (98), Expect = 1.198e-39
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAG-GPLGEVTDPLYP 75
            +LMGAVEGYR+AG GPLGE  D LYP
Sbjct:   24 ILMGAVEGYRVAGDGPLGEAEDLLYP 49
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.547e-35
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 295
            AFDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 43.8986 bits (102), Expect = 3.547e-35
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG VEGYR+ GGP GE  DPLYP
Sbjct:  175 VLMGLVEGYRVNGGPAGEGLDPLYP 199
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.625e-35
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 295
            +FDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  184 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254

HSP 2 Score: 43.5134 bits (101), Expect = 4.625e-35
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMG +EGYR+ GGP GE  DPLYP
Sbjct:  157 VLMGLIEGYRVNGGPAGEGLDPLYP 181
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.833e-34
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 295
            +FDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251

HSP 2 Score: 43.1282 bits (100), Expect = 3.833e-34
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMG +EGYR+ GGP GE  DPLYP
Sbjct:  154 ILMGLIEGYRVNGGPAGEGLDPLYP 178
The following BLAST results are available for this feature:
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB26_PETSP1.417e-4093.15Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2_PHYPA1.846e-4087.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA5.320e-4086.30Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ6.933e-4090.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.933e-4090.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH9.031e-4094.52Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_RAPSA1.198e-3991.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_DUNSA3.547e-3581.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO4.625e-3583.10Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE3.833e-3480.28Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623672 ID=BQ623672; Name=BQ623672; organism=Citrus sinensis; type=EST; length=411bp
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCA
TGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATT
TATAAATGCTT
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