BQ623672

Overview
NameBQ623672
Unique NameBQ623672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:590..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.435e-33
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 298
            +FD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          

HSP 2 Score: 51.9878 bits (123), Expect = 1.435e-33
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYRIA GPLGEVTDPLYP
Sbjct:  170 ILMGAVEGYRIARGPLGEVTDPLYP 194          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.006e-33
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 298
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  194 FDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          

HSP 2 Score: 28.1054 bits (61), Expect = 7.006e-33
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = 1
Query:    1 VLMGAVEGYRIAGGP-LGEVTDPLYP 75
            VLMG VEG+RI G P +GE  D LYP
Sbjct:  165 VLMGLVEGFRINGLPGVGEGND-LYP 189          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.827e-31
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 298
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          

HSP 2 Score: 24.6386 bits (52), Expect = 2.827e-31
Identity = 15/26 (57.69%), Postives = 18/26 (69.23%), Query Frame = 1
Query:    1 VLMGAVEGYRIAG-GPLGEVTDPLYP 75
            +LMG VEG+RI G   +GE  D LYP
Sbjct:  168 LLMGLVEGFRINGLDGVGEGND-LYP 192          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.706e-28
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 298
            FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 25.409 bits (54), Expect = 2.706e-28
Identity = 14/27 (51.85%), Postives = 15/27 (55.56%), Query Frame = 1
Query:    1 VLMGAVEGYRIAGGPLG--EVTDPLYP 75
            VLMG  E YR  GG  G  +  D LYP
Sbjct:  152 VLMGLAEAYRANGGSEGFLDDLDTLYP 178          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.909e-22
Identity = 47/71 (66.20%), Postives = 52/71 (73.24%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 295
            FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   51 FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          

HSP 2 Score: 30.8018 bits (68), Expect = 1.909e-22
Identity = 17/28 (60.71%), Postives = 18/28 (64.29%), Query Frame = 1
Query:    1 VLMGAVEGYR---IAGGPLGEVTDPLYP 75
            +LMGAVEGYR    A G  GE  D LYP
Sbjct:   20 LLMGAVEGYRAGNTAPGQFGEDLDRLYP 47          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.982e-20
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
            FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.416e-17
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
            F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
            F+PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 265
            AFDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.953e-15
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 265
            AFDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_MALDO1.435e-3377.78Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC7.006e-3388.73Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU2.827e-3187.32Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE2.706e-2880.28Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR1.909e-2266.20Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH3.982e-2076.67Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.416e-1765.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.199e-1660.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU2.953e-1566.13Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.953e-1566.13Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623672 ID=BQ623672; Name=BQ623672; organism=Citrus sinensis; type=EST; length=411bp
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCA
TGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATT
TATAAATGCTT
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