BQ623679

Overview
NameBQ623679
Unique NameBQ623679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.053e-44
Identity = 84/126 (66.67%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  121 VKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGNREDQINRLIRRMN 246          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.478e-41
Identity = 78/128 (60.94%), Postives = 97/128 (75.78%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIRRMN 379
            +++ KAT  +L  VEPY+ +GYPNL SVR+L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP FK+A+NFLWPF            R   HY+EGG  GNRE+ IN LI+  N
Sbjct:  123 VRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 3.551e-40
Identity = 78/126 (61.90%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 376
            +K+NKAT+NML   EPY+T+GYPNLKSVRELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+FK A+NFLWPF             NHYV GGD GNRED IN L+R+M
Sbjct:  126 IKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.551e-40
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 376
            +K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHFKEA NFLWPF             NH+VEGGD GNRED IN L+R+M
Sbjct:  119 VKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.551e-40
Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIRRMN 379
            +KV KAT  +L  VEPYV YGYP+  ++R+L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L++ MN
Sbjct:  116 VKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREEFINKLVKSMN 243          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.638e-40
Identity = 77/126 (61.11%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRM 376
            +K NKAT  ML  VEPYVTYG PNLK+VREL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NF+WPF            +  H++EGGDAG R+++IN L+R+M
Sbjct:  125 VKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.349e-39
Identity = 71/128 (55.47%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIRRMN 379
            +KV KATL +L  +EPYV YGYP+  ++R+L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L++ MN
Sbjct:  117 VKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKAMN 244          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.349e-39
Identity = 71/128 (55.47%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIRRMN 379
            +KV KATL +L  +EPYV YGYP+  ++R+L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L++ MN
Sbjct:  117 VKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.746e-39
Identity = 71/127 (55.91%), Postives = 98/127 (77.17%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRMN 379
            +++ KAT  +L   EPY+ YGYPNL ++R L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +EDLIHEI TVGP+FK+ANNFLWPF            +  H+++GGD GNRE++IN L+++MN
Sbjct:  115 VRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.492e-38
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIRRMN 379
            +KV KAT  +L  +EPYV YGYP+  +VR+L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE +IN+L++ MN
Sbjct:  117 VKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
The following BLAST results are available for this feature:
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CHICK4.053e-4466.6760S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_YARLI5.478e-4160.9460S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_DROME3.551e-4061.9060S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_CAEEL3.551e-4058.4060S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_ASHGO3.551e-4057.8160S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7C_SCHPO4.638e-4061.1160S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7B_YEAST1.349e-3955.4760S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST1.349e-3955.4760S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_DEBHA8.746e-3955.9160S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7_CANGA1.492e-3856.2560S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00770 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00770 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623679 ID=BQ623679; Name=BQ623679; organism=Citrus sinensis; type=EST; length=466bp
TTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAGTTGAGCCCT
ATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAACTGATTTAC
AAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTTGACCGACAA
TTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATTATCTGCATGGAAG
ATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAGGAGGCAAAC
AACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGGTGGCCTGAAGAA
GAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAAACCGTGAAGATT
ACATCAATGAGCTCATCAGAAGGATGAACTAGGCTTCTGCAGAATATCCT
ACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTAAATTTTGGCTTT
TGGTGGTTCCTATTCC
back to top