BQ623679

Overview
NameBQ623679
Unique NameBQ623679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1002 contig Csv1_Contig1002:179..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 7.404e-38
Identity = 72/126 (57.14%), Postives = 93/126 (73.81%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +K+NKA++NML  VEPYV YG+PNLKS++ELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HFK+ NN LWPF            +  +++GGDAGNRE  IN LI RMN
Sbjct:  121 VKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.670e-38
Identity = 75/126 (59.52%), Postives = 96/126 (76.19%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRRM 376
            +K NKA   ML  VEPYVTYG PN K+VRELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NFLWPF            +  H++EGGDAG R+++IN L+++M
Sbjct:  124 VKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-37
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 376
            ++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L++RM
Sbjct:  123 VRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.799e-37
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 376
            ++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L++RM
Sbjct:  123 VRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2
Query:   11 NKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIRR 373
            NKA   ML  VEPYV YG PNL SVRELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HFKE   FLWPF            +  H+ EG  AG   + INELI++
Sbjct:  126 NKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +KV   ++ ML  VEPYVT+G+PNLKSVRELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E ++FL PF                 E G  G R D IN+LIR++N
Sbjct:  121 VKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 63/126 (50.00%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +KV    L ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G  G R + IN+LIR++N
Sbjct:  121 VKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.502e-27
Identity = 63/126 (50.00%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            +KV    L ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G  G R + IN+LIR++N
Sbjct:  121 VKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 2
Query:    5 KVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNH-YVEGGDAGNREDYINELIRRMN 379
            K   +    L +V+PYVTYGYPN KSV++LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HF+E   FL P             +   + EGGD GNRED IN+LI +MN
Sbjct:  122 KATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.227e-25
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 379
            ++V   T+  L  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+  + FL PF                 E G  G R + IN+LIR++N
Sbjct:  122 MQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_DICDI7.404e-3857.1460S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7B_SCHPO9.670e-3859.5260S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL72_PARTE4.799e-3756.8060S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE4.799e-3756.8060S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO1.352e-3155.7460S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL7L_MOUSE4.810e-2950.0060S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN3.447e-2750.0060S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PONAB4.502e-2750.0060S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL71_ARATH1.003e-2648.4160S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_PIG3.227e-2546.8360S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00770 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00770 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623679 ID=BQ623679; Name=BQ623679; organism=Citrus sinensis; type=EST; length=466bp
TTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAGTTGAGCCCT
ATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAACTGATTTAC
AAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTTGACCGACAA
TTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATTATCTGCATGGAAG
ATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAGGAGGCAAAC
AACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGGTGGCCTGAAGAA
GAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAAACCGTGAAGATT
ACATCAATGAGCTCATCAGAAGGATGAACTAGGCTTCTGCAGAATATCCT
ACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTAAATTTTGGCTTT
TGGTGGTTCCTATTCC
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