BQ623679

Overview
NameBQ623679
Unique NameBQ623679
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1002 contig Csv1_Contig1002:179..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.576e-16
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 268
            +K+ K    +L  + PYV  G P+L S+R LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F   N FL PF
Sbjct:  177 VKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPF 271          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.775e-15
Identity = 41/95 (43.16%), Postives = 63/95 (66.32%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRG---YGKLNKQR---IALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 268
            +K+ + T ++L  + PYV  G P+LKS+R LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F + N FL PF
Sbjct:  172 IKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPF 266          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.371e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 268
            +K+ K    +L  V PY+  G P+L S+R LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F +   FL PF
Sbjct:  173 IKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPF 267          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 2
Query:   29 MLHRVEPYVTYGYPNLKSVRELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 268
            +L  V PYV  G P+L S+R L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F + N FL PF
Sbjct:  157 LLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPF 242          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.091e-12
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   11 NKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRN-HYVEGGDAGNREDYINELIRRM 376
            NK+T  ML  ++ +V +G   ++ +R+L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      FK+ N+FL+PF            ++  + +GG  GN +D ++ L+ RM
Sbjct:  118 NKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPPRGGFKGQKSKSFNDGGSVGNHQDLLSNLLERM 238          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 2
Query:    2 LKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGY-----GKLNKQRIALTDNS-IIEQALGQH-GIICMEDLIHEILTVGPHFKEANNFLWPF 268
            +K+  AT+ +L  + PY+  G P+L S+R+L  KR        +  + RI   DN+ ++E   G   G IC+EDLIHE+ T+G HFK  +N++ PF
Sbjct:  131 VKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPF 226          
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Match: YP197_YEAST (Putative uncharacterized protein YPL197C OS=Saccharomyces cerevisiae GN=YPL197C PE=5 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = -1
Query:   32 LVHPSDELIDVIFTVSCITAFNIVVPLLLQA--TQWCLELEGP*EVVCLLEVRTNSQNLMDEIFHADNSMLPKSLFNDRIVGQSNPLLI*FAVTPLVNQFSDTL*IGVPICYIGLNSVQ 382
            LVH  ++ ID  FTV+  T  + ++ L      T+W  +LE P +VV LLEV TNS + +++I +  +++L +  F+D IVGQ N LL+    T LV+Q S++    V +  +  N +Q
Sbjct:   19 LVHSLNQFIDEFFTVTERTTLDEMLELSWDTPTTRWVGQLEWPQKVVSLLEVWTNSDDFVNQIVNGQDTILTQVGFDDSIVGQWNSLLVDLTETSLVDQLSNSRVGWVTVSNVWFNQLQ 137          
The following BLAST results are available for this feature:
BLAST of BQ623679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST3.576e-1645.26Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_CANGA1.775e-1543.16Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_KLULA4.371e-1441.05Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_ASHGO2.833e-1343.02Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU4.091e-1230.8960S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_DEBHA6.979e-1238.54Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
YP197_YEAST5.908e-1136.13Putative uncharacterized protein YPL197C OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00770 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00770 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623679 ID=BQ623679; Name=BQ623679; organism=Citrus sinensis; type=EST; length=466bp
TTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAGTTGAGCCCT
ATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAACTGATTTAC
AAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTTGACCGACAA
TTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATTATCTGCATGGAAG
ATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAGGAGGCAAAC
AACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGGTGGCCTGAAGAA
GAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAAACCGTGAAGATT
ACATCAATGAGCTCATCAGAAGGATGAACTAGGCTTCTGCAGAATATCCT
ACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTAAATTTTGGCTTT
TGGTGGTTCCTATTCC
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