BQ623686
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 9.953e-96 Identity = 150/166 (90.36%), Postives = 159/166 (95.78%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEE+KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 9.953e-96 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 9.953e-96 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 185 GGRNRGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4) HSP 1 Score: 313.923 bits (803), Expect = 1.690e-95 Identity = 148/166 (89.16%), Postives = 159/166 (95.78%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 1.690e-95 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 1.690e-95 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 185 GGRNRGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 1.691e-95 Identity = 148/166 (89.16%), Postives = 159/166 (95.78%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 1.691e-95 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 1.691e-95 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 185 GGRNRGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 6.353e-95 Identity = 149/166 (89.76%), Postives = 159/166 (95.78%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RDE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 6.353e-95 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 28.8758 bits (63), Expect = 6.353e-95 Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRN VG+IKNREK Sbjct: 185 GGRNTGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2) HSP 1 Score: 311.612 bits (797), Expect = 8.280e-95 Identity = 147/166 (88.55%), Postives = 158/166 (95.18%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 8.280e-95 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 8.280e-95 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 185 GGRNRGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3) HSP 1 Score: 308.531 bits (789), Expect = 3.373e-93 Identity = 146/166 (87.95%), Postives = 158/166 (95.18%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKANDTIK+DLE NKI DFIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTG 185 HSP 2 Score: 46.9802 bits (110), Expect = 3.373e-93 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 28.8758 bits (63), Expect = 3.373e-93 Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRN VG+IKNREK Sbjct: 185 GGRNTGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 3.373e-93 Identity = 148/166 (89.16%), Postives = 156/166 (93.98%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++ +E KFKLCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTG 185 HSP 2 Score: 45.8246 bits (107), Expect = 3.373e-93 Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAP+HWML Sbjct: 1 MARGLKKHLKRLNAPRHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 3.373e-93 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 185 GGRNRGRVGVIKNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 2.274e-88 Identity = 142/166 (85.54%), Postives = 151/166 (90.96%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+ + DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGN+VMV G Sbjct: 20 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTG 181 HSP 2 Score: 46.9802 bits (110), Expect = 2.274e-88 Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARGLKKHLKRLNAPKHWML Sbjct: 1 MARGLKKHLKRLNAPKHWML 20 HSP 3 Score: 31.187 bits (69), Expect = 2.274e-88 Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRNR VG+IKNREK Sbjct: 181 GGRNRGRVGVIKNREK 196
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 5.384e-70 Identity = 119/169 (70.41%), Postives = 136/169 (80.47%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 5.384e-70 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.483 bits (49), Expect = 5.384e-70 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NRE+ Sbjct: 181 CMVTGGANLGRIGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3) HSP 1 Score: 242.662 bits (618), Expect = 7.011e-70 Identity = 119/169 (70.41%), Postives = 136/169 (80.47%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 7.011e-70 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.483 bits (49), Expect = 7.011e-70 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NRE+ Sbjct: 181 CMVTGGANLGRIGVITNRER 200 The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bpback to top |