BQ623686
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3) HSP 1 Score: 238.424 bits (607), Expect = 5.800e-69 Identity = 116/169 (68.64%), Postives = 135/169 (79.88%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYP GFMDVVSI KT ENFRL+YD KGRF +H + +EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DL+ KITDFIKF+ GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVVSIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVRKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTIRIDLDTGKITDFIKFETGNMCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 5.800e-69 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 24.6386 bits (52), Expect = 5.800e-69 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NREK Sbjct: 181 CMVTGGANLGRIGVITNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3) HSP 1 Score: 239.195 bits (609), Expect = 7.553e-69 Identity = 118/169 (69.82%), Postives = 135/169 (79.88%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 7.553e-69 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.483 bits (49), Expect = 7.553e-69 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NRE+ Sbjct: 181 CMVTGGANLGRIGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 235.343 bits (599), Expect = 4.797e-68 Identity = 115/169 (68.05%), Postives = 135/169 (79.88%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + KGIP++ T+D RTIRYPDPLIK NDT++++LE KITDFIKFD GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 4.797e-68 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 24.6386 bits (52), Expect = 4.797e-68 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NREK Sbjct: 181 CMVTGGANLGRIGVITNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3) HSP 1 Score: 234.958 bits (598), Expect = 6.247e-68 Identity = 116/169 (68.64%), Postives = 133/169 (78.70%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR G K IP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MV G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTG 185 HSP 2 Score: 40.0466 bits (92), Expect = 6.247e-68 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 24.6386 bits (52), Expect = 6.247e-68 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NREK Sbjct: 181 CMVTGGANLGRIGVITNREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 239.965 bits (611), Expect = 1.068e-67 Identity = 114/166 (68.67%), Postives = 133/166 (80.12%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +AP+PS+GPHK RE LPLI+ LRNRLKYAL REV AILMQRHV VDGKVRTD TYPAGFMDV+++ TNENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL KITDFIKFD G +V V G Sbjct: 20 LDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTG 185 HSP 2 Score: 37.7354 bits (86), Expect = 1.068e-67 Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRL AP HW+L Sbjct: 1 MARGPKKHLKRLAAPHHWLL 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 234.958 bits (598), Expect = 1.796e-67 Identity = 113/169 (66.86%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KIT FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 1.796e-67 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 1.796e-67 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3) HSP 1 Score: 234.187 bits (596), Expect = 3.966e-67 Identity = 114/169 (67.46%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KIT FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 3.966e-67 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 22.7126 bits (47), Expect = 3.966e-67 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG++ NRE+ Sbjct: 181 CMVIGGANLGRVGVVTNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 5.165e-67 Identity = 110/166 (66.27%), Postives = 132/166 (79.52%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H + EEAK+KLCKV+ V G K +PY+ T+DGRTIRYPDPLIK ND+I+LD+ KI DFIKF+ GN+ M+ G Sbjct: 20 LDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 185 HSP 2 Score: 40.4318 bits (93), Expect = 5.165e-67 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRLNAPK WML Sbjct: 1 MARGPKKHLKRLNAPKAWML 20 HSP 3 Score: 21.9422 bits (45), Expect = 5.165e-67 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GGRN VG I +RE+ Sbjct: 181 CMITGGRNLGRVGTIVSRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.485e-66 Identity = 108/166 (65.06%), Postives = 133/166 (80.12%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H + EEAK+KLCKV+ V G K +P++ T+DGRTIRYPDPLIK ND+++LD+ +KI DFIKF+ GN+ M+ G Sbjct: 20 LDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGRTIRYPDPLIKVNDSVQLDIATSKIMDFIKFESGNLCMITG 185 HSP 2 Score: 40.4318 bits (93), Expect = 1.485e-66 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRLNAPK WML Sbjct: 1 MARGPKKHLKRLNAPKAWML 20 HSP 3 Score: 21.9422 bits (45), Expect = 1.485e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GGRN VG I +RE+ Sbjct: 181 CMITGGRNLGRVGTIVSRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 2.518e-66 Identity = 111/166 (66.87%), Postives = 130/166 (78.31%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG FAP+PS+GPHK RE LPLI++LRNRLKYALT EV I+ QR + VDGKVRTD YPAGFMDVV+I KT E FRLLYD KGRF LH + EEAK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL KI D+IKFD GN+ MV G Sbjct: 20 LDKLGGVFAPRPSTGPHKLRESLPLIIMLRNRLKYALTGAEVKKIVKQRLIKVDGKVRTDTNYPAGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTG 185 HSP 2 Score: 40.817 bits (94), Expect = 2.518e-66 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRLNAPK WML Sbjct: 1 MARGPKKHLKRLNAPKSWML 20 HSP 3 Score: 22.3274 bits (46), Expect = 2.518e-66 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I +RE+ Sbjct: 181 CMVTGGHNLGRVGVITSRER 200 The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bpback to top |