BQ623686
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 3.279e-66 Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KI +FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 3.279e-66 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 3.279e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 3.279e-66 Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KI +FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 3.279e-66 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 3.279e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 3.279e-66 Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KI +FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 3.279e-66 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 3.279e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 3.279e-66 Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KI +FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 3.279e-66 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 3.279e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 7.238e-66 Identity = 112/169 (66.27%), Postives = 133/169 (78.70%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF + + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KI +FIKFD GN+ MV+G Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRITVEEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIG 185 HSP 2 Score: 40.0466 bits (92), Expect = 7.238e-66 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20 HSP 3 Score: 23.0978 bits (48), Expect = 7.238e-66 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N VG+I NRE+ Sbjct: 181 CMVIGGANLGRVGVITNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 7.466e-66 Identity = 114/166 (68.67%), Postives = 132/166 (79.52%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +APKPS GPHK+RECLPLI+ LRNRLKYAL REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMV G Sbjct: 20 LDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185 HSP 2 Score: 35.039 bits (79), Expect = 7.466e-66 Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 M RG KKHLKR+ AP HW+L Sbjct: 1 MVRGPKKHLKRVAAPHHWLL 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 7.466e-66 Identity = 114/166 (68.67%), Postives = 132/166 (79.52%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +APKPS GPHK+RECLPLI+ LRNRLKYAL REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMV G Sbjct: 20 LDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185 HSP 2 Score: 35.039 bits (79), Expect = 7.466e-66 Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 M RG KKHLKR+ AP HW+L Sbjct: 1 MVRGPKKHLKRVAAPHHWLL 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2) HSP 1 Score: 236.498 bits (602), Expect = 7.466e-66 Identity = 114/166 (68.67%), Postives = 132/166 (79.52%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +APKPS GPHK+RECLPLI+ LRNRLKYAL REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMV G Sbjct: 20 LDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185 HSP 2 Score: 35.039 bits (79), Expect = 7.466e-66 Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 M RG KKHLKR+ AP HW+L Sbjct: 1 MVRGPKKHLKRVAAPHHWLL 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 9.425e-66 Identity = 108/166 (65.06%), Postives = 131/166 (78.92%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV I MQR + VDGKVRTD YP GFMDVV+I KT E FRL+YD KGRF +H + +EEAK+KLCKVR VQ G KG+P++ T+DGRT+RYPDP+IK NDTI+L++ NKI D IKFD GN+ M+ G Sbjct: 20 LGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRISNEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITG 185 HSP 2 Score: 40.817 bits (94), Expect = 9.425e-66 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRLNAPK WML Sbjct: 1 MARGPKKHLKRLNAPKSWML 20 HSP 3 Score: 21.557 bits (44), Expect = 9.425e-66 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GGRN VG + +RE+ Sbjct: 181 CMITGGRNLGRVGTVVSRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 1.228e-65 Identity = 111/166 (66.87%), Postives = 131/166 (78.92%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +AP+ S+GPHK RE LPL++ LRNRLKYAL REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK NDT+K+DL KIT F+KF+ GNIVM G Sbjct: 20 LDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTG 185 HSP 2 Score: 39.2762 bits (90), Expect = 1.228e-65 Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRL AP HWML Sbjct: 1 MARGPKKHLKRLAAPSHWML 20 HSP 3 Score: 21.9422 bits (45), Expect = 1.228e-65 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRN VG I +RE+ Sbjct: 185 GGRNMGRVGTITHRER 200 The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bpback to top |