BQ623686

Overview
NameBQ623686
Unique NameBQ623686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 4.594e-65
Identity = 106/166 (63.86%), Postives = 131/166 (78.92%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            L   GG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VDGKVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI D IKFD GN+ M+ G
Sbjct:   20 LDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITG 185          

HSP 2 Score: 40.4318 bits (93), Expect = 4.594e-65
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            MARG KKHLKRLNAPK WML
Sbjct:    1 MARGPKKHLKRLNAPKAWML 20          

HSP 3 Score: 23.483 bits (49), Expect = 4.594e-65
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  563 CHGPGGRNRSPVGIIKNREK 622
            C   GGRN   VG + NRE+
Sbjct:  181 CMITGGRNLGRVGTVVNRER 200          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 8.138e-65
Identity = 112/166 (67.47%), Postives = 130/166 (78.31%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            L    G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV  ILMQR V VDGKVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  +  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E  KIT FI F+V N+ M++G
Sbjct:   20 LDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVG 185          

HSP 2 Score: 39.2762 bits (90), Expect = 8.138e-65
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            MARG KKHLKRL AP HWML
Sbjct:    1 MARGPKKHLKRLAAPNHWML 20          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.915e-64
Identity = 105/166 (63.25%), Postives = 131/166 (78.92%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            L   GG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+ G
Sbjct:   20 LDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185          

HSP 2 Score: 37.3502 bits (85), Expect = 2.915e-64
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            MARG KKHLKRL APK WML
Sbjct:    1 MARGPKKHLKRLAAPKAWML 20          

HSP 3 Score: 23.483 bits (49), Expect = 2.915e-64
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  563 CHGPGGRNRSPVGIIKNREK 622
            C   GGRN   VG + NRE+
Sbjct:  181 CMITGGRNLGRVGTVVNRER 200          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 3.079e-64
Identity = 119/169 (70.41%), Postives = 136/169 (80.47%), Query Frame = 3
Query:   72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            LD LT   G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MV G
Sbjct:    1 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG 166          

HSP 2 Score: 23.483 bits (49), Expect = 3.079e-64
Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  563 CHGPGGRNRSPVGIIKNREK 622
            C   GG N   +G+I NRE+
Sbjct:  162 CMVTGGANLGRIGVITNRER 181          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 3.344e-63
Identity = 109/168 (64.88%), Postives = 131/168 (77.98%), Query Frame = 3
Query:   72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVL 575
            LD LT   G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL   KIT FIKFD GN+ MV+
Sbjct:   20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVI 184          

HSP 2 Score: 40.0466 bits (92), Expect = 3.344e-63
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            MARG KKHLKR+ APKHWML
Sbjct:    1 MARGPKKHLKRVAAPKHWML 20          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.526e-62
Identity = 105/166 (63.25%), Postives = 128/166 (77.11%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            L    G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL   KI  FIKFD G +VMV G
Sbjct:   20 LXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTG 185          

HSP 2 Score: 37.7354 bits (86), Expect = 1.526e-62
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            M RG KKHLKRL AP HWML
Sbjct:    1 MGRGPKKHLKRLAAPSHWML 20          

HSP 3 Score: 23.8682 bits (50), Expect = 1.526e-62
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  575 GGRNRSPVGIIKNREK 622
            GGRN   VG+I +REK
Sbjct:  185 GGRNLGRVGVIVHREK 200          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.719e-56
Identity = 99/166 (59.64%), Postives = 119/166 (71.69%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            L   GG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++   KITD +KF+ GN+  V G
Sbjct:   19 LDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184          

HSP 2 Score: 35.8094 bits (81), Expect = 8.719e-56
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 1
Query:   28 RGLKKHLKRLNAPKHWML 81
            RG KKHLKRL AP HWML
Sbjct:    2 RGPKKHLKRLAAPSHWML 19          

HSP 3 Score: 22.7126 bits (47), Expect = 8.719e-56
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  575 GGRNRSPVGIIKNREK 622
            GGRN   VGII +RE+
Sbjct:  184 GGRNVGRVGIIGHRER 199          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 9.050e-48
Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = 3
Query:   81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMV 572
            L   GG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +
Sbjct:   19 LNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYI 184          

HSP 2 Score: 38.1206 bits (87), Expect = 9.050e-48
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 1
Query:   25 ARGLKKHLKRLNAPKHWML 81
            ARG KKHLKR+NAPK WML
Sbjct:    1 ARGPKKHLKRINAPKSWML 19          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.035e-33
Identity = 65/150 (43.33%), Postives = 100/150 (66.67%), Query Frame = 3
Query:   93 GGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFI 542
            GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  E +K+ ++I
Sbjct:   24 GGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172          

HSP 2 Score: 28.4906 bits (62), Expect = 6.035e-33
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:   22 MARGLKKHLKRLNAPKHWML 81
            M  G + HLKR  APK WML
Sbjct:    1 MPTGHRDHLKRKTAPKSWML 20          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.248e-27
Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            F  +P  G H   E LPL+L++R+ LKYA   RE   I+    VLVDG+VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + + E +I   I F+VG +  + G
Sbjct:   28 FTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITG 192          

HSP 2 Score: 26.9498 bits (58), Expect = 4.248e-27
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query:   28 RGLKKHLKRLNAPKHWML 81
            +G K+HLKRL AP  W L
Sbjct:    4 KGPKRHLKRLAAPVRWEL 21          
The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_CARGR4.594e-6563.8640S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_DICDI8.138e-6567.4740S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_DROME2.915e-6463.2540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_HORSE3.079e-6470.4140S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4Y2_HUMAN3.344e-6364.8840S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL1.526e-6263.2540S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL8.719e-5659.6440S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH9.050e-4854.2240S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU6.035e-3343.3340S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METJA4.248e-2738.9230S ribosomal protein S4e OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00777 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00777 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bp
AGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAA
GAGGCTCAATGCCCCTAAGCACTGGATGCTTTGACAAGCTTTGGTGGTGC
ATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGC
CATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGT
GAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGT
TAGGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTC
CCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTC
CGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGT
TAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATG
ATGGGCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACC
ATCAAACTTGACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGA
TGTTGGGAATATTGTCATGGTCCTGGGGGTAGAAACAGAAGTCCAGTTGG
AATCATCAAGAACAGGGAAAAG
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