BQ623686
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 4.594e-65 Identity = 106/166 (63.86%), Postives = 131/166 (78.92%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG +AP+PS+GPHK RE LPL++ LRNRLKYALT EV I+MQR + VDGKVRTD YP+GFMDV++I KT E FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++ +KI D IKFD GN+ M+ G Sbjct: 20 LDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITG 185 HSP 2 Score: 40.4318 bits (93), Expect = 4.594e-65 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRLNAPK WML Sbjct: 1 MARGPKKHLKRLNAPKAWML 20 HSP 3 Score: 23.483 bits (49), Expect = 4.594e-65 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GGRN VG + NRE+ Sbjct: 181 CMITGGRNLGRVGTVVNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 228.794 bits (582), Expect = 8.138e-65 Identity = 112/166 (67.47%), Postives = 130/166 (78.31%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV ILMQR V VDGKVRTD YPAGFMDV+SI KT ENFRLL+D KGRF L + EEAKFKL +V V+ G +GIPY++T DGRTIRYPDP I +DTIK+D+E KIT FI F+V N+ M++G Sbjct: 20 LDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVG 185 HSP 2 Score: 39.2762 bits (90), Expect = 8.138e-65 Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRL AP HWML Sbjct: 1 MARGPKKHLKRLAAPNHWML 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 226.483 bits (576), Expect = 2.915e-64 Identity = 105/166 (63.25%), Postives = 131/166 (78.92%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG FAP+PS+GPHK RE LPL++ LRNRLKYAL EV I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H + EEAK+KLCKV+ Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ KITD+IKFD GN+ M+ G Sbjct: 20 LDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITG 185 HSP 2 Score: 37.3502 bits (85), Expect = 2.915e-64 Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKRL APK WML Sbjct: 1 MARGPKKHLKRLAAPKAWML 20 HSP 3 Score: 23.483 bits (49), Expect = 2.915e-64 Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GGRN VG + NRE+ Sbjct: 181 CMITGGRNLGRVGTVVNRER 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 3.079e-64 Identity = 119/169 (70.41%), Postives = 136/169 (80.47%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MV G Sbjct: 1 LDKLT---GVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTG 166 HSP 2 Score: 23.483 bits (49), Expect = 3.079e-64 Identity = 9/20 (45.00%), Postives = 12/20 (60.00%), Query Frame = 2 Query: 563 CHGPGGRNRSPVGIIKNREK 622 C GG N +G+I NRE+ Sbjct: 162 CMVTGGANLGRIGVITNRER 181
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 222.631 bits (566), Expect = 3.344e-63 Identity = 109/168 (64.88%), Postives = 131/168 (77.98%), Query Frame = 3 Query: 72 LDALTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVL 575 LD LT G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL KIT FIKFD GN+ MV+ Sbjct: 20 LDKLT---GVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVI 184 HSP 2 Score: 40.0466 bits (92), Expect = 3.344e-63 Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 MARG KKHLKR+ APKHWML Sbjct: 1 MARGPKKHLKRVAAPKHWML 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.526e-62 Identity = 105/166 (63.25%), Postives = 128/166 (77.11%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V GKVRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H + EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL KI FIKFD G +VMV G Sbjct: 20 LXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTG 185 HSP 2 Score: 37.7354 bits (86), Expect = 1.526e-62 Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 M RG KKHLKRL AP HWML Sbjct: 1 MGRGPKKHLKRLAAPSHWML 20 HSP 3 Score: 23.8682 bits (50), Expect = 1.526e-62 Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRN VG+I +REK Sbjct: 185 GGRNLGRVGVIVHREK 200
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 8.719e-56 Identity = 99/166 (59.64%), Postives = 119/166 (71.69%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 L GG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VDGKVRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++ EA FKLCKV+SV+ KG+P + T DGRTIRYPDP +K NDTI ++ KITD +KF+ GN+ V G Sbjct: 19 LDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184 HSP 2 Score: 35.8094 bits (81), Expect = 8.719e-56 Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 28 RGLKKHLKRLNAPKHWML 81 RG KKHLKRL AP HWML Sbjct: 2 RGPKKHLKRLAAPSHWML 19 HSP 3 Score: 22.7126 bits (47), Expect = 8.719e-56 Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 2 Query: 575 GGRNRSPVGIIKNREK 622 GGRN VGII +RE+ Sbjct: 184 GGRNVGRVGIIGHRER 199
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 9.050e-48 Identity = 90/166 (54.22%), Postives = 112/166 (67.47%), Query Frame = 3 Query: 81 LTSFGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMV 572 L GG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL EEAK+KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI +F + GN+ + Sbjct: 19 LNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYI 184 HSP 2 Score: 38.1206 bits (87), Expect = 9.050e-48 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 1 Query: 25 ARGLKKHLKRLNAPKHWML 81 ARG KKHLKR+NAPK WML Sbjct: 1 ARGPKKHLKRINAPKSWML 19
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 6.035e-33 Identity = 65/150 (43.33%), Postives = 100/150 (66.67%), Query Frame = 3 Query: 93 GGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFI 542 GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+G+VRT+ +P G DVVSI KT E+FR+LY+ +F LH + EEA ++L KV + ++ +GIPYI + G +IR+ DP I TIK+ E +K+ ++I Sbjct: 24 GGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172 HSP 2 Score: 28.4906 bits (62), Expect = 6.035e-33 Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1 Query: 22 MARGLKKHLKRLNAPKHWML 81 M G + HLKR APK WML Sbjct: 1 MPTGHRDHLKRKTAPKSWML 20
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.248e-27 Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 3 Query: 102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578 F +P G H E LPL+L++R+ LKYA RE I+ VLVDG+VR ++ P G MDVVS+P NEN+R+L+D KGR +L E KLCK+++ + G +N +DGR I+ DP + K DT+ + + E +I I F+VG + + G Sbjct: 28 FTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITG 192 HSP 2 Score: 26.9498 bits (58), Expect = 4.248e-27 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 28 RGLKKHLKRLNAPKHWML 81 +G K+HLKRL AP W L Sbjct: 4 KGPKRHLKRLAAPVRWEL 21 The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bpback to top |