BQ623686

Overview
NameBQ623686
Unique NameBQ623686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:35..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  111 KPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVLG 578
            + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I    +   G   +++G
Sbjct:   25 RANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIG 185          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.951e-16
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVLG 578
            F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M++G
Sbjct:   23 FVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIG 182          

HSP 2 Score: 21.1718 bits (43), Expect = 3.951e-16
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 1
Query:   43 HLKRLNAPKHW 75
            HLKR+ +PK W
Sbjct:    4 HLKRVVSPKSW 14          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGN 560
            + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + + + KI++ IK   GN
Sbjct:   23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGN 173          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.690e-14
Identity = 48/159 (30.19%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            + P P  G HK+   + L+ ++R+ L+ +   RE   IL    V VDGKV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L + KIT+ IK   GN   + G
Sbjct:   23 WGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITG 179          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.207e-14
Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 3
Query:   96 GAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 551
            G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI + I  +
Sbjct:   26 GYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLE 176          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  123 GPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V + G
Sbjct:   30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITG 179          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 48/161 (29.81%), Postives = 79/161 (49.07%), Query Frame = 3
Query:  111 KPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVLG 578
            + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM +G
Sbjct:   25 RASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVG 185          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.123e-13
Identity = 40/159 (25.16%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   96 GAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMV 572
            G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++
Sbjct:   25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLI 183          

HSP 2 Score: 23.483 bits (49), Expect = 2.123e-13
Identity = 8/14 (57.14%), Postives = 13/14 (92.86%), Query Frame = 1
Query:   22 MARGLKKHLKRLNA 63
            MA+G+KKH KR+++
Sbjct:    1 MAKGIKKHQKRISS 14          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.808e-11
Identity = 43/155 (27.74%), Postives = 72/155 (46.45%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIV 566
            F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V
Sbjct:   23 FTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALV 176          

HSP 2 Score: 21.557 bits (44), Expect = 1.808e-11
Identity = 7/14 (50.00%), Postives = 9/14 (64.29%), Query Frame = 1
Query:   34 LKKHLKRLNAPKHW 75
            +  H KRL+ PK W
Sbjct:    1 MTNHQKRLSVPKSW 14          
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.808e-11
Identity = 43/155 (27.74%), Postives = 72/155 (46.45%), Query Frame = 3
Query:  102 FAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIV 566
            F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V
Sbjct:   23 FTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALV 176          

HSP 2 Score: 21.557 bits (44), Expect = 1.808e-11
Identity = 7/14 (50.00%), Postives = 9/14 (64.29%), Query Frame = 1
Query:   34 LKKHLKRLNAPKHW 75
            +  H KRL+ PK W
Sbjct:    1 MTNHQKRLSVPKSW 14          
The following BLAST results are available for this feature:
BLAST of BQ623686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULTO1.382e-1629.1930S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_METHJ3.951e-1630.2530S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_THEAC8.959e-1633.3330S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_THEVO1.690e-1430.1930S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_NANEQ2.207e-1435.2930S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_PICTO4.916e-1430.9230S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_METS58.385e-1429.8130S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4_BIGNA2.123e-1325.1640S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_HALSA1.808e-1127.7430S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS31.808e-1127.7430S ribosomal protein S4e OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00777 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00777 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623686 ID=BQ623686; Name=BQ623686; organism=Citrus sinensis; type=EST; length=622bp
AGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAA
GAGGCTCAATGCCCCTAAGCACTGGATGCTTTGACAAGCTTTGGTGGTGC
ATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGC
CATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGT
GAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGT
TAGGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTC
CCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTC
CGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGT
TAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATG
ATGGGCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACC
ATCAAACTTGACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGA
TGTTGGGAATATTGTCATGGTCCTGGGGGTAGAAACAGAAGTCCAGTTGG
AATCATCAAGAACAGGGAAAAG
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