BQ623688

Overview
NameBQ623688
Unique NameBQ623688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length442
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6429 contig Csv1_Contig6429:406..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.274e-11
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQI-TNILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            AEALE IP  LAE+AG++ L  + +LR+ H+QG   +G+NV +G+I  ++ + NV +P+LV    I  A+E    ILKIDD++
Sbjct:  443 AEALETIPTVLAESAGMDALEALLKLRSLHSQGYKFAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVI 525          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALE IP  LAE AGL  ++ + +LR RHA+G  N+G++V  G+I  ++   N+++P+ V +  +  A E    ILKIDD++
Sbjct:  446 ADALEEIPLILAETAGLEAISSLMDLRARHAKGLSNTGVDVIGGKIVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLI 528          
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    2 AEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQIT-NILEENVVQPLLVSTSAITLAAECVRMILKIDDIV 247
            A+ALE IP  LAE AGL  ++ + +LR RHA+G  N+G++V  G+I  ++   N+++P+ V    +  A E    ILKIDD++
Sbjct:  446 ADALEEIPTILAETAGLEAISALMDLRARHAKGLTNTGVDVIGGKIVDDVYALNIIEPIRVKAQVLKSATEAATAILKIDDLI 528          
The following BLAST results are available for this feature:
BLAST of BQ623688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
THSA_AERPE2.274e-1144.58Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULSO5.067e-1140.96Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH5.067e-1140.96Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00779 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00779 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623688 ID=BQ623688; Name=BQ623688; organism=Citrus sinensis; type=EST; length=442bp
TGCAGAGGCACTTGAGGTTATTCCCTATACTTTGGCTGAGAATGCTGGGT
TGAACCCGCTTGCCATTGTGACTGAACTGAGGAACAGGCATGCACAAGGG
GAAATCAATTCTGGAATCAATGTGAGGAAGGGGCAGATTACCAATATTTT
GGAGGAGAATGTGGTGCAGCCACTGCTTGTGAGCACAAGTGCAATAACAC
TGGCTGCAGAGTGTGTAAGGATGATTTTGAAGATTGATGACATCGTTACT
GTGAGGTAGTTTTGCATCCAAAGATGAAAGTGTGTTCCCTACTTATGTTT
TGCGTCCTTGTATTATCTGAATTAGTAAGCTCTGTTTTAGGATTGATTGC
TGTTAAGAGTTTTGACTTTGTTATTTTTGTTGCCAAATATTTGGTTTGAA
TTTGCTGTTTTATGGTTAATTAGCAGTCGAATGACTGATTAA
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