BQ623698

Overview
NameBQ623698
Unique NameBQ623698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.355e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  211 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.994e-25
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.134e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  215 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.134e-25
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            K IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  214 KHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.134e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  214 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.134e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  214 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  210 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 161
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  209 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.558e-24
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.035e-24
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  175 KELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_APIGR5.355e-2596.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC6.994e-2596.30Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB28_PEA9.134e-2594.44Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC9.134e-2596.30Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_ARATH9.134e-2594.44Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH9.134e-2594.44Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_SOYBN1.193e-2496.30Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.193e-2496.23Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL1.558e-2496.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA2.035e-2494.44Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00789 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623698 ID=BQ623698; Name=BQ623698; organism=Citrus sinensis; type=EST; length=274bp
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCT
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