BQ623698

Overview
NameBQ623698
Unique NameBQ623698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.340e-18
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 158
            KEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  221 KEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.845e-17
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 158
            KEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  200 KEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.367e-17
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 161
            KEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  200 KEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.012e-15
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 161
            KE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  215 KELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.047e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 128
            KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  224 KEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.787e-12
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 128
            KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  224 KEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.513e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 3
Query:    3 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 128
            KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  226 KEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
The following BLAST results are available for this feature:
BLAST of BQ623698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB2_DUNSA6.340e-1878.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.845e-1778.85Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE5.367e-1777.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.012e-1577.36Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.047e-1276.19Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.787e-1273.81Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.513e-1166.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00789 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00789 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623698 ID=BQ623698; Name=BQ623698; organism=Citrus sinensis; type=EST; length=274bp
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCT
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