BQ623715

Overview
NameBQ623715
Unique NameBQ623715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623715_ssr36 microsatellite BQ623715_ssr36:36..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig764 contig Csv1_Contig764:571..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.841e-87
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            PLYWAAQGT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS ILVPYHGWRISHRTHHQNHGHVENDESW PL E++Y+ L  +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YG+PY IFVMWLD VT
Sbjct:   83 PLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVT 258          

HSP 2 Score: 59.6918 bits (143), Expect = 4.841e-87
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  602 YLHHHGHENKLPWYRGKEWSYLRG 673
            YLHHHGH+ KLPWYRGKEWSYLRG
Sbjct:  259 YLHHHGHDEKLPWYRGKEWSYLRG 282          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.420e-25
Identity = 64/188 (34.04%), Postives = 101/188 (53.72%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEK----IYRTLDSAT-RFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVT 602
            PLYW  Q ++   L+V+GH+CGH +FS+   ++  VG +LHS ++ PY  W+ SHR HH N   ++NDE + P S+      Y+ L+    R L   I F  L +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++T
Sbjct:   80 PLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITF-TLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIIT 263          

HSP 2 Score: 26.5646 bits (57), Expect = 1.420e-25
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  602 YLHHHGHENKLPWYRGKEWSYLRG 673
            YLHH      LP Y   EW++LRG
Sbjct:  264 YLHHT--HLSLPHYDSSEWNWLRG 285          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.071e-23
Identity = 60/185 (32.43%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL-----DSATRFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            PLYWA QG +   ++V+ H+CGH +FS+   L+  VG + HS +LVPY  W+ SHR HH N G +E DE + P  +   +       +   R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYG+P  I   +L L+T
Sbjct:   87 PLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLIT 270          

HSP 2 Score: 23.483 bits (49), Expect = 6.071e-23
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  614 HGHENKLPWYRGKEWSYLRG 673
            H H + LP Y   EW +LRG
Sbjct:  274 HTHPS-LPHYDSSEWDWLRG 292          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 63/200 (31.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSE--------------------KIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            P YW  QG +   ++VL H+CGH SFS    LN+ VG +LHS +LVPYH WRISH  HH+  GH+  D+ + P +                      ++   ++    L + +   L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T
Sbjct:   94 PAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLIT 293          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22
Identity = 63/200 (31.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSE--------------------KIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            P YW  QG +   ++VL H+CGH SFS    LN+ VG +LHS +LVPYH WRISH  HH+  GH+  D+ + P +                      ++   ++    L + +   L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T
Sbjct:   94 PAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLIT 293          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.438e-22
Identity = 62/194 (31.96%), Postives = 93/194 (47.94%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP------------LSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRS------PGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            PLYWA QG +   ++V+ H+CGH +FS+   L+  VG + HS +LVPY  W+ SHR HH N G +E DE + P            L+  + RT+    +F         L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYG+P  I   +L L+T
Sbjct:   87 PLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQF--------TLGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLIT 271          

HSP 2 Score: 23.483 bits (49), Expect = 8.438e-22
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  614 HGHENKLPWYRGKEWSYLRG 673
            H H + LP Y   EW +LRG
Sbjct:  275 HTHPS-LPHYDSSEWDWLRG 293          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.417e-21
Identity = 57/184 (30.98%), Postives = 92/184 (50.00%), Query Frame = 3
Query:   78 LYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL-----DSATRFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            +YWA QG +   ++V+ H+CGH +FS+   L+ +VG +LHS++LVPY  W+ SHR HH N G +E DE + P  +   +       +   R L   +    L +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YG+P  +   +L L+T
Sbjct:   88 IYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTL-TLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLIT 270          

HSP 2 Score: 23.0978 bits (48), Expect = 2.417e-21
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  632 LPWYRGKEWSYLRG 673
            LP Y   EW +LRG
Sbjct:  279 LPHYTSSEWDWLRG 292          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.351e-20
Identity = 59/185 (31.89%), Postives = 94/185 (50.81%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP--------LSEKIYRTLDSATRFL-RFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            P+YW  QG +   ++V+ H+CGH +FS    ++ VVG  LHS++LVPY  W+ISHR HH N G ++ DE + P         S+ +   L  A   L    I +P+    F +  R      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YG+P  I   +L  +T
Sbjct:   91 PIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMY-LAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTIT 274          

HSP 2 Score: 21.557 bits (44), Expect = 3.351e-20
Identity = 7/14 (50.00%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  632 LPWYRGKEWSYLRG 673
            LP Y   EW +L+G
Sbjct:  283 LPHYDSSEWDWLKG 296          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 52/177 (29.38%), Postives = 86/177 (48.59%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAAL-LVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            P+ W   GT     FV+GHDCGH SFS +  +N  VGH+L   I+ P+H WRI H  HH+    +E D +W P  ++ Y+   +A +F+  ++ + L     +        +  HFD     F   +R+ V  S++     AA+    +   +G    +K + +P+ +F  W+   T
Sbjct:   71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEYQ---NAGKFM--QVTYDLFRGRAWWIGSILHWASIHFDWTK--FEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFT 240          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 47/177 (26.55%), Postives = 81/177 (45.76%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDV-ITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            P+ W   GT     FV+GHDCGH SF+    +N +VGH+  + ++ P+H WR+ H  HH +   +E D +W P S + ++   +  R       +  +  PF+        S  HF  ++  F   +R  V ++  V +   A     L    G    +K + +P+ ++  W+   T
Sbjct:   72 PITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRLF-----YRAIRGPFWWTGSIFHWSLMHFKLSN--FAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFT 241          
The following BLAST results are available for this feature:
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_ARATH4.841e-8771.59Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.420e-2534.04Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD6E_ARATH6.071e-2332.43Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS1.982e-2231.50Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP2.589e-2231.50Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD6E_BRAJU8.438e-2231.96Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN2.417e-2130.98Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN3.351e-2031.89Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
DESA_SPIPL1.920e-1729.38Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
DESA_SYNY33.621e-1626.55Fatty acid desaturase OS=Synechocystis sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00806 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00806 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623715 ID=BQ623715; Name=BQ623715; organism=Citrus sinensis; type=EST; length=674bp
ATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCTGCT
TATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCAGGGAAC
CATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAAGCT
TTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCT
TCAATTCTGGTTCCTTATCATGGATGGAGAATTAGCCACAGGACTCATCA
TCAAAACCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTG
AGAAAATTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAA
ATTCCTTTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCC
GGGGAAGTCTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAA
GTGAGAGGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCT
GCTTTGCTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAA
ACTCTATGGCCTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGA
CTACTTGCATCACCATGGGCATGAAAACAAACTTCCGTGGTATCGGGGAA
AGGAATGGAGTTACTTAAGGGGAG
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