BQ623715

Overview
NameBQ623715
Unique NameBQ623715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623715_ssr36 microsatellite BQ623715_ssr36:36..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig764 contig Csv1_Contig764:571..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 55/180 (30.56%), Postives = 79/180 (43.89%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVT 602
            PL W   GT     FV+GHDC H SFS++  +  +VG L    ++ PY  WR  H  HH     +  D +WHP    +++    +T  LR  I   +  Y PF  W         HFD     F PSE   V  S  C    A + +G   ++   G M  +K + +P+  +  W+   T
Sbjct:  147 PLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHP----VWKDEFESTPLLRKAI---IYGYGPFRCWMSIAHWLMWHFDLKK--FRPSEVPRVKISLAC--VFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFT 315          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            PL WA  GT     FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     + +D +W P+  + +     ++  LR  I F     P   W         HF  N   F PSE   V  S  C    A + VG   + + +G +  +K + +P+  +  W+   T
Sbjct:  148 PLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEF----DSSPVLRKAIIFGY--GPIRPWLSIAHWVNWHF--NLRKFRPSEVNRVKISLAC--VFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFT 316          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 49/179 (27.37%), Postives = 75/179 (41.90%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGLPYWIFVMWLDLVT 602
            PL WA  GT     FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     + +D +W P+  + + +     + + F         P   W         HF  N   F  SE   V  S  C    A + VG   + + +G +  +K + +P+  +  W+   T
Sbjct:  153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYG------PIRPWLSIAHWVNWHF--NLKKFRASEVNRVKISLAC--VFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFT 321          
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 49/180 (27.22%), Postives = 75/180 (41.67%), Query Frame = 3
Query:   75 PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVT 602
            PL WA  GT     FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     +  D +W P+ ++   +     + L       + AY P   W         HF  N   F  SE K    S       A +++G   ++   G +  +K + +P+  +  W+   T
Sbjct:  153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKAL-------IYAYGPLRTWMSIAHWLKVHF--NLKDFRQSEVKRATISLA--AVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFT 321          
The following BLAST results are available for this feature:
BLAST of BQ623715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6C_SOYBN1.376e-1530.56Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA3.747e-1329.61Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH2.429e-1227.37Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL4.143e-1227.22Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00806 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00806 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623715 ID=BQ623715; Name=BQ623715; organism=Citrus sinensis; type=EST; length=674bp
ATGTTGTTAGAGATGTTGTGGTGGTTTTTGGCTTGGCTGCTGCTGCTGCT
TATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTGCTCAGGGAAC
CATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAAGCT
TTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCT
TCAATTCTGGTTCCTTATCATGGATGGAGAATTAGCCACAGGACTCATCA
TCAAAACCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTG
AGAAAATTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAA
ATTCCTTTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCC
GGGGAAGTCTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAA
GTGAGAGGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCT
GCTTTGCTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAA
ACTCTATGGCCTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGA
CTACTTGCATCACCATGGGCATGAAAACAAACTTCCGTGGTATCGGGGAA
AGGAATGGAGTTACTTAAGGGGAG
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