BQ623717

Overview
NameBQ623717
Unique NameBQ623717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_THEPD (Replication factor C small subunit OS=Thermofilum pendens (strain Hrk 5) GN=rfcS PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.984e-38
Identity = 86/198 (43.43%), Postives = 122/198 (61.62%), Query Frame = 2
Query:   17 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVR 610
            LELNASD+RGIDV+R +I+D+A T           KLV+LDEAD MT DAQ ALRR +E +++NTRF LI N  +KII  +QSRC  FRF PL      +RL+ + + EG+ V +G L A+     GD+RKA+N LQ+    S+ +TEE VY   G   PK++ ++    L  +  ++  ++  +    GL+ VDI+R
Sbjct:   71 LELNASDERGIDVIRSRIKDYARTLPIG---DVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNLLEARDKLRLLLYNYGLSGVDIIR 265          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_HALWD (Replication factor C small subunit OS=Haloquadratum walsbyi (strain DSM 16790) GN=rfcS PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.984e-38
Identity = 86/205 (41.95%), Postives = 128/205 (62.44%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            + N +LELNASD+RGIDVVR +I++FA +   SFG     +++ LDEAD++T DAQ ALRR +E++  NTRF L CN  +KII  +QSRC  FRF+PL    +  + K +  AE +++TE GL ALV    GDMR+A+N LQ+     + + EE VY  T    P+DIE +    ++  F  +  ++  + +  G+A  DI+ ++
Sbjct:  400 WQNNLLELNASDERGIDVVRDRIKNFARS---SFG-GYDHRIIFLDEADSLTDDAQSALRRTMEQFADNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSETAIRGQTKDIAAAENIELTEDGLDALVYAAGGDMRRAINSLQAAATTGEVVDEETVYTITSTARPEDIETMVTAAIDGDFTTARSQLQTLLVDTGMAGGDIIDQL 600          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_SULTO (Replication factor C small subunit OS=Sulfolobus tokodaii GN=rfcS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.481e-37
Identity = 86/205 (41.95%), Postives = 129/205 (62.93%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            Y    LELNASD+RGIDV+R ++++FA T +   G     K+VLLDEAD MT DAQ ALRR +E YT+ TRF L CN ++KII  +QSR   FRF PL+   V  RL ++ + E ++  +  L  +  +  GDMRKA+NILQ++ +   ++T EAVY   G   PK+I ++    L  +F  + +++ E+ +  GL+  DI++++
Sbjct:   69 YRQYFLELNASDERGIDVIRNKVKEFARTVA---GGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYG-KVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKAREKLRELLVNYGLSGEDIIKQI 269          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.481e-37
Identity = 86/200 (43.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:   17 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            LELNASD+RGIDVVR +I++FA T   SFG     +++ LDEADA+T DAQ ALRR +E+++ N RF L CN  ++II  +QSRC  FRF+PL    V E ++ +   E +++TE GL ALV   +GDMRKA+N LQ+  ++   + E AVY  T    P++I  +    L+  F  S   +  +   +G+A  DI+ ++
Sbjct:   81 LELNASDERGIDVVRDRIKNFART---SFG-GVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQL 276          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_METST (Replication factor C small subunit OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rfcS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.934e-37
Identity = 81/199 (40.70%), Postives = 123/199 (61.81%), Query Frame = 2
Query:   17 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVRE 613
            LELNASD RGID VR +I+ F   ++    V A  +++ LDE D MTKDAQ ALRR +E YTK + F L CN  +KII  +QSRC  FRF+P++  ++ +RLK++   EG++  +  L  +V    GDMRK++NILQ++      +TEEAVY       PKD+ +I    LN  F ++   + ++ + +G++  D++ +
Sbjct:   70 LELNASDARGIDTVRNEIKSFCKLKA----VGAPFRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFMEARDLLRDIMIIEGVSGDDLITQ 264          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.309e-37
Identity = 83/205 (40.49%), Postives = 129/205 (62.93%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            Y   +LELNASD+RGI+V+R+++++FA +++     +   K+VLLDEAD MT DAQ ALRR++E Y+  TRF LI N  +KII  +QSRC  FRF PL    V ERL+++ E EG+D  E  L A+  +  GDMRKA+N+LQ+      ++T +AVY   G   P+++ ++    L   F  +   + ++ +  G++  D+ R++
Sbjct:   69 YRQYMLELNASDERGINVIREKVKEFARSRT---PPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLG-KVTVDAVYRVVGMAKPREVREMLATALKGDFTAARSLLRKIMIEYGMSGEDVARQI 269          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.627e-37
Identity = 84/204 (41.18%), Postives = 125/204 (61.27%), Query Frame = 2
Query:   20 ELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREVTMV 625
            ELNASD+RGID+VR +I++FA T        A  K++ LDEADA+T DAQ ALRR +E+++ N RF L CN  +KII  +QSRC  +RF  L    + ERL+++   +GL +TEGG  AL+ +  GDMRKA+N LQ+       + I+ E +Y  T    P++I+ +    L  +F  + K ++ +   +GL+  DIV ++  V
Sbjct:   82 ELNASDERGIDIVRNKIKNFAKTAPIG---GAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRV 282          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAR (Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.627e-37
Identity = 80/198 (40.40%), Postives = 125/198 (63.13%), Query Frame = 2
Query:   17 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVR 610
            LELNASD+RGI+V+R+++++FA T       KA  KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V++II  + SRC  FRF+P+    + ERL+H+ ++EG+++ +  +  +  +  GDMRKA+N+LQ     S+ +   AV   T    P D+ ++     N     + +++ E+   KG+A +D +R
Sbjct:   71 LELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRPADVVELFNLAFNGDVTKAREKLRELMYVKGIAGIDFIR 265          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.349e-37
Identity = 79/205 (38.54%), Postives = 125/205 (60.98%), Query Frame = 2
Query:    2 YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            + +  +E+NASD+RGIDVVR +I++FA T        A  K++ LDEADA+T DAQ ALRR +E Y+K+ RF L CN V++II  +QSRC  FRF P+    + +RL  + E EG+ +TE GL AL+ +  GD RKA+N LQ      + +  + +Y  T    P+++ ++    L  +F ++ + +  + +  G++  DIV ++
Sbjct:   67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG---GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQL 268          
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.254e-36
Identity = 84/200 (42.00%), Postives = 127/200 (63.50%), Query Frame = 2
Query:   17 LELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMTMRKGLALVDIVREV 616
            LELNASD RGIDVVR +I+ FA     SFG     +++ LDEADA+T DAQ ALRR +E+++ NTRF L CN  ++II  +QSRC  FRF+PL    V E+++ + + EG+++T+ G+ ALV   +GDMRKA+N LQ+  +    + EEAVY  T    P++I ++    ++  F  +  ++  +    G+A  DI+ ++
Sbjct:   79 LELNASDQRGIDVVRDRIKSFARA---SFG-GYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVTEAMDGDFTAARSQLETLLTDVGIAGGDIIDQL 274          
The following BLAST results are available for this feature:
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RFCS_THEPD2.984e-3843.43Replication factor C small subunit OS=Thermofilum ... [more]
RFCS_HALWD2.984e-3841.95Replication factor C small subunit OS=Haloquadratu... [more]
RFCS_SULTO1.481e-3741.95Replication factor C small subunit OS=Sulfolobus t... [more]
RFCS_HALMA1.481e-3743.00Replication factor C small subunit OS=Haloarcula m... [more]
RFCS_METST1.934e-3740.70Replication factor C small subunit OS=Methanosphae... [more]
RFCS_AERPE4.309e-3740.49Replication factor C small subunit OS=Aeropyrum pe... [more]
RFCS_METAC5.627e-3741.18Replication factor C small subunit OS=Methanosarci... [more]
RFCS1_PYRAR5.627e-3740.40Replication factor C small subunit 1 OS=Pyrobaculu... [more]
RFCS_ARCFU7.349e-3738.54Replication factor C small subunit OS=Archaeoglobu... [more]
RFCS_NATPD1.254e-3642.00Replication factor C small subunit OS=Natronomonas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00808 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00808 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623717 ID=BQ623717; Name=BQ623717; organism=Citrus sinensis; type=EST; length=632bp
ATATCACAATATGATTCTGGAGCTGAATGCGTCTGATGATAGAGGAATTG
ACGTTGTGCGGCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCA
TTTGGTGTAAAGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGC
CATGACAAAGGATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACA
CGAAGAACACTAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATT
CCAGCACTGCAGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACC
TGTTCATGTGACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTG
ATGTAACCGAGGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGAT
ATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCA
AATTACAGAAGAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGG
ACATTGAGCAAATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGT
TTCAAGCGAATATCTGAAATGACAATGAGGAAAGGATTGGCGTTGGTAGA
TATTGTGAGGGAAGTGACAATGGTTGGTTTTA
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