BQ623717

Overview
NameBQ623717
Unique NameBQ623717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Match: RFCL_METAC (Replication factor C large subunit OS=Methanosarcina acetivorans GN=rfcL PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 2 
Query:   14 ILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTR--FALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAV 469
            ++ELNASD R   V+ ++I   A++ +  FG K   +L++LDEAD +   A     R I    K T     LI N +  + P +++ C   +F  ++   +   LK V  AEG+  ++  L  +     GD R A+N LQ+     +++  E +
Sbjct:   76 VIELNASDQRTAGVI-EKIAGSAASMNTLFGSK---RLIILDEADNIHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAASGKEKLEVEDI 225
The following BLAST results are available for this feature:
BLAST of BQ623717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RFCL_METAC9.047e-1129.22Replication factor C large subunit OS=Methanosarci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00808 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00808 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623717 ID=BQ623717; Name=BQ623717; organism=Citrus sinensis; type=EST; length=632bp
ATATCACAATATGATTCTGGAGCTGAATGCGTCTGATGATAGAGGAATTG
ACGTTGTGCGGCAACAGATCCAAGATTTTGCTAGCACTCAAAGCTTCTCA
TTTGGTGTAAAGGCATCAGTCAAGCTGGTCTTGCTTGATGAGGCTGATGC
CATGACAAAGGATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACA
CGAAGAACACTAGGTTTGCGCTTATCTGTAATCAGGTCAACAAGATTATT
CCAGCACTGCAGTCTAGATGTACCAGATTCCGATTTGCTCCTCTTGAACC
TGTTCATGTGACTGAGCGTCTCAAACATGTAATAGAGGCTGAAGGCCTTG
ATGTAACCGAGGGTGGCTTGGCAGCGCTTGTACGGCTTTGCAATGGTGAT
ATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATGGCGTCTCAGCA
AATTACAGAAGAAGCTGTATACTTGTGCACTGGAAACCCTTTGCCCAAGG
ACATTGAGCAAATATCTTACTGGCTTCTGAACGAATCATTTGCGGATAGT
TTCAAGCGAATATCTGAAATGACAATGAGGAAAGGATTGGCGTTGGTAGA
TATTGTGAGGGAAGTGACAATGGTTGGTTTTA
back to top