BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.568e-60
Identity = 101/135 (74.81%), Postives = 114/135 (84.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+Q  DGPTTV+G +SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PED+ RHA              +F+++D+QIPL+GPNSI+GRAVVVHADPDDLGKGGHELSKTTGNAGGRVACG+IGLQG
Sbjct:   18 IFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152          

HSP 2 Score: 30.0314 bits (66), Expect = 3.568e-60
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL  +EGV GT F
Sbjct:    1 MVKAVAVLSSSEGVSGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.652e-60
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + FSQ+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDENRHA            TA+FT+ D QIPL+GP SIIGR VVVHADPDDLGKGGHEL+KTTGNAGGRVACGIIGLQG
Sbjct:   18 ILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 24.6386 bits (52), Expect = 4.652e-60
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAVL  +E V GT
Sbjct:    1 MVKAVAVLSSSECVSGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.913e-60
Identity = 104/135 (77.04%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + FSQEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHG PEDE+RHA                 + D+QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   17 IFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 151          

HSP 2 Score: 27.7202 bits (60), Expect = 7.913e-60
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL GT+ VKGT F
Sbjct:    1 MVKAVAVLAGTD-VKGTIF 18          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.345e-59
Identity = 102/135 (75.56%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEG+GPTTV+GSL+GLKPG HGFHVHALGDTTNGC+STG HFNP   EHG PEDENRHA            T +F++ D+QIPL+GPNSIIGRAVVVHAD DDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 31.9574 bits (71), Expect = 1.345e-59
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVLG +EGV GT F
Sbjct:    1 MVKAVAVLGSSEGVTGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 2.286e-59
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + FSQE +G PTTV+G LSGLKPGPHGFHVHALGDTTNGCMSTGPH+NP GK+HG P+DE+RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 IFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153          

HSP 2 Score: 30.0314 bits (66), Expect = 2.286e-59
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL  +EGV GT F
Sbjct:    1 MVKAVAVLSSSEGVSGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.765e-59
Identity = 109/150 (72.67%), Postives = 119/150 (79.33%), Query Frame = 3
Query:   12 KQLQFLVELRVSREPVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            K +  L    + +  + F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    3 KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 2.765e-59
Identity = 109/150 (72.67%), Postives = 119/150 (79.33%), Query Frame = 3
Query:   12 KQLQFLVELRVSREPVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            K +  L    + +  + F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:    3 KAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 3.886e-59
Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+Q+G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct:   18 ILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          

HSP 2 Score: 28.1054 bits (61), Expect = 3.886e-59
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAVL  +EGV GT
Sbjct:    1 MVKAVAVLNSSEGVSGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 5.066e-59
Identity = 104/135 (77.04%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            ++FSQEG+GPTTV+G+L+GLKPG HGFH+HALGDTTNGC+STGPHFNP GKEHG PEDE RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 INFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 23.0978 bits (48), Expect = 5.066e-59
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAVL  +  V GT
Sbjct:    1 MVKAVAVLSNSNEVSGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 5.066e-59
Identity = 105/135 (77.78%), Postives = 112/135 (82.96%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEGDG TTVSG++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D QIPL+GPNSI+GRAVVVHADPDDLGKGGHELS  TGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152          

HSP 2 Score: 26.5646 bits (57), Expect = 5.066e-59
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            M K VAVL  +EGV GT F
Sbjct:    1 MAKGVAVLNSSEGVTGTIF 19          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CARPA3.568e-6074.81Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_CAPAN4.652e-6077.78Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_MAIZE7.913e-6077.04Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_SOYBN1.345e-5975.56Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_SOLCS2.286e-5977.21Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC1_ORYSJ2.765e-5972.67Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI2.765e-5972.67Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC2_SOLLC3.886e-5975.56Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC_PEA5.066e-5977.04Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ARATH5.066e-5977.78Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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