BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 1.464e-58
Identity = 103/135 (76.30%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 25.7942 bits (55), Expect = 1.464e-58
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            M K V VL  +EGVKGT F
Sbjct:    1 MGKGVRVLNSSEGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.464e-58
Identity = 102/133 (76.69%), Postives = 112/133 (84.21%), Query Frame = 3
Query:   63 FSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            F+Q G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct:   20 FTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          

HSP 2 Score: 28.4906 bits (62), Expect = 1.464e-58
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCFLF 67
            MVKAVAVL  +EGV GT +LF
Sbjct:    1 MVKAVAVLNSSEGVSGT-YLF 20          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 3.245e-58
Identity = 100/135 (74.07%), Postives = 112/135 (82.96%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+ EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HG PED NRHA            TATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:   18 IFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 28.8758 bits (63), Expect = 3.245e-58
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            M K VAVL  +EGVKGT F
Sbjct:    1 MAKGVAVLNSSEGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 9.376e-58
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HG PED NRHA            TATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:   18 IFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 27.7202 bits (60), Expect = 9.376e-58
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            M K VAVL  +EGVKGT F
Sbjct:    1 MGKGVAVLNSSEGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.981e-57
Identity = 100/135 (74.07%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            V F+QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P D+NRHA            T  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG++GLQG
Sbjct:   20 VQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.422e-55
Identity = 101/135 (74.81%), Postives = 109/135 (80.74%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHG PEDE RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG IGLQG
Sbjct:   18 IHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.516e-48
Identity = 86/133 (64.66%), Postives = 102/133 (76.69%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HG PEDENRHA             A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   85 VTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          

HSP 2 Score: 22.3274 bits (46), Expect = 1.516e-48
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   70 KAVAVLKGTSSVEGVVTL 87          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 3.355e-48
Identity = 88/133 (66.17%), Postives = 101/133 (75.94%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   87 VTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          

HSP 2 Score: 22.3274 bits (46), Expect = 3.355e-48
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   72 KAVAVLKGTSNVEGVVTL 89          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.051e-46
Identity = 87/133 (65.41%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ SQE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HG PED+ RHA             A  T+VD QIPLSGPN++IGRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   77 VTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          

HSP 2 Score: 22.3274 bits (46), Expect = 1.051e-46
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   62 KAVAVLKGTSSVEGVVTL 79          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.785e-46
Identity = 86/133 (64.66%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +Q+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HG P DE RHA             A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   84 VTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          

HSP 2 Score: 22.3274 bits (46), Expect = 1.785e-46
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   69 KAVAVLKGTSNVEGVVTL 86          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC1_BRAJU1.464e-5876.30Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC1_SOLLC1.464e-5876.69Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_BRAOC3.245e-5874.07Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC2_BRAJU9.376e-5876.30Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PINSY1.981e-5774.07Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_PANGI2.422e-5574.81Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS1.516e-4864.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL3.355e-4866.17Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_VITVI1.051e-4665.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_PETHY1.785e-4664.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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