BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.786e-46
Identity = 85/133 (63.91%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +Q+  GPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG+IGL
Sbjct:   81 VTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          

HSP 2 Score: 21.9422 bits (45), Expect = 1.786e-46
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   66 KAVAVLKGTSDVEGVVTL 83          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.968e-45
Identity = 86/133 (64.66%), Postives = 98/133 (73.68%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ SQE +GPTTV   L+GL PG HGFH+H  GDTTNGCMSTG HFNP    HG PED+ RHA             A  T+VDNQIPLSGP+S+IGRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:    6 VTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 138          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +Q+ +GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   67 VTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 84/133 (63.16%), Postives = 98/133 (73.68%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ SQ+ DGPTTV+  ++GL PG HGFH+H  GDTTNGCMSTG HFNP    HG P DE RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   82 VTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 214          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 83/133 (62.41%), Postives = 99/133 (74.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +QE + PTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VDNQIPL+GPNS+IGRA+VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   67 VTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 199          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.650e-44
Identity = 82/133 (61.65%), Postives = 97/133 (72.93%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+ +Q+  GPTTV+  ++GL PG HGFH+H  GDTTNGC+STGPHFNP    HG PEDE RHA             A  T+VD QIPLSGPNS++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   76 VTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 208          

HSP 2 Score: 21.557 bits (44), Expect = 4.650e-44
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   11 KAVAVLGGTEGVKGTCFL 64
            KAVAVL GT  V+G   L
Sbjct:   61 KAVAVLKGTSQVEGVVTL 78          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.680e-44
Identity = 85/134 (63.43%), Postives = 95/134 (70.90%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 458
            + F Q+  G T V G ++GL PG HGFH+HALGDTTNGC STGPHFNP  K+HG P D  RHA             A  +V D QIPLSG +SI+GRAVVVHAD DDLG+ GHELSKTTGNAG RV CGIIGLQ
Sbjct:   20 LQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRCGIIGLQ 153          

HSP 2 Score: 23.483 bits (49), Expect = 4.680e-44
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            ++KAVAV+ G   VKG+
Sbjct:    3 VIKAVAVINGNNNVKGS 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.800e-42
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QEG+G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:   17 VFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 81/134 (60.45%), Postives = 92/134 (68.66%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE +G P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D++I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:   17 VFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.167e-41
Identity = 81/134 (60.45%), Postives = 91/134 (67.91%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE +  P  V+G ++GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D +I L G NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    9 VFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 142          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODCP_ARATH1.786e-4663.91Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_PINSY2.968e-4564.66Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_PEA1.473e-4461.65Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLLC1.924e-4463.16Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_MEDSA1.924e-4462.41Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_ORYSJ4.650e-4461.65Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODC2_MESCR4.680e-4463.43Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_DROVI1.800e-4261.19Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DROWI5.239e-4260.45Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_DROBS1.167e-4160.45Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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