BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.991e-41
Identity = 81/133 (60.90%), Postives = 94/133 (70.68%), Query Frame = 3 
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+  QE DGPTTV+  ++GL PG HGFH+H  GDTTNGC+STG HFNP    HG P D  RHA             A  T+VD+QIPLSG NS++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 VTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 213
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.201e-40
Identity = 78/134 (58.21%), Postives = 89/134 (66.42%), Query Frame = 3 
Query:   57 VSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE    P  V G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                  + D++I L G NSI+GR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 2.875e-40
Identity = 79/134 (58.96%), Postives = 91/134 (67.91%), Query Frame = 3 
Query:   57 VSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 2.875e-40
Identity = 79/134 (58.96%), Postives = 91/134 (67.91%), Query Frame = 3 
Query:   57 VSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.754e-40
Identity = 78/134 (58.21%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:   57 VSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:   16 VFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGI 149
[Close]
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 8.364e-40
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = 3 
Query:   57 VSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:   17 VFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODCP_ZANAE1.991e-4160.90Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_DROSI2.201e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE2.201e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME2.201e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA2.201e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_CHYAM2.201e-4058.21Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_DROYA2.875e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR2.875e-4058.96Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_DROPS3.754e-4058.21Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_DROTE8.364e-4058.21Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
back to top