BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.636e-35
Identity = 71/133 (53.38%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAGGR+ACG+IG+
Sbjct:   19 IRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.636e-35
Identity = 69/133 (51.88%), Postives = 86/133 (64.66%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH              A   + D+ I L+GP+ IIGR +VVHA  DDLG+GG   SK TGNAG R+ACG+IG+
Sbjct:   20 IHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 3.636e-35
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q E +GP  V GS++GL  G HGFHVH  GD T GC S GPHFNP  ++HG PEDE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 INFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.749e-35
Identity = 71/134 (52.99%), Postives = 84/134 (62.69%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q +   P  +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG P DENRH              +   + DN I L G NSIIGR++VVH   DDLG+G  + SK TGNAG R+ CGII L
Sbjct:   16 INFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.203e-35
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD+ I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   19 IHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.382e-34
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F  +G+    V+G++ GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              AT  + D+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   19 IYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 151          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.805e-34
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:   19 IHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.078e-34
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 INFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.078e-34
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D+ RH              A  ++ D+ I LSG  SIIGR +VVH   DDLGKG +E S  TGNAG R+ACG+IG+
Sbjct:   19 IHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.020e-34
Identity = 69/134 (51.49%), Postives = 83/134 (61.94%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P DE RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 IHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_SHEEP3.636e-3553.38Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CHICK3.636e-3551.88Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_CEBAP3.636e-3552.99Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC5_DICDI4.749e-3552.99Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_BOSMU6.203e-3552.63Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_PIG1.382e-3450.38Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_BOVIN1.805e-3452.63Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_HYLLA3.078e-3451.49Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_CANFA3.078e-3451.13Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_RAT4.020e-3451.49Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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