BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.020e-34
Identity = 69/134 (51.49%), Postives = 83/134 (61.94%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P DE RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 IHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.956e-34
Identity = 69/134 (51.49%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 INFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 8.956e-34
Identity = 69/134 (51.49%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   19 INFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.027e-33
Identity = 70/135 (51.85%), Postives = 84/135 (62.22%), Query Frame = 3
Query:   57 VSFSQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG PEDENRH              A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:   18 VHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          

HSP 2 Score: 24.6386 bits (52), Expect = 1.027e-33
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKG 52
            MVKAVAVL G  GV G
Sbjct:    1 MVKAVAVLKGDAGVSG 16          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.170e-33
Identity = 69/134 (51.49%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   20 INFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.170e-33
Identity = 70/141 (49.65%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   72 EGDGPT-------------TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            +GDGP               V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+ACG+IG+
Sbjct:   10 KGDGPVQGTIRFEAKGHTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.338e-33
Identity = 65/125 (52.00%), Postives = 80/125 (64.00%), Query Frame = 3
Query:   84 PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P+DENRH              A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:   28 PTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          

HSP 2 Score: 25.7942 bits (55), Expect = 1.338e-33
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCFL 64
            MVKAVAVL G+ GV G   L
Sbjct:    1 MVKAVAVLRGSAGVSGVVTL 20          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.528e-33
Identity = 70/135 (51.85%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGS-LSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 458
            V F QEG+      G  L GL PG HGFHVH  GD TNGC+S GPHFNPA K+H  P+DE+RH              A   + D +I L+GP SIIGR +V+H   DDLG+GG+E S  TGNAG R+ACG+IG +
Sbjct:   19 VYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.528e-33
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:   19 IHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.995e-33
Identity = 66/133 (49.62%), Postives = 81/133 (60.90%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            + F Q+G GP  V G ++GL  G H FHVH  GD   GC S GPHFNP  K+HG P+DE RH              A   + D+ I LSG  S+IGR +VVH   DDLGKGG++ S  TGNAG R+ACG+IG+
Sbjct:   19 IHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_MOUSE4.020e-3451.49Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODC_PANTR8.956e-3451.49Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN8.956e-3451.49Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_ASHGO1.027e-3351.85Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_PONPY1.170e-3351.49Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC_CEREL1.170e-3349.65Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_CANGA1.338e-3352.00Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_XIPGL1.528e-3351.85Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_CAPHI1.528e-3351.88Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_RABIT1.995e-3349.62Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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