BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.606e-33
Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   93 VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++GS+SGL+PG HGFH+H  GD  NGC++ G HFNP    HG PED NRH                  + D+ I L+G +++IGRA+V+HAD DDLG+G  ELSKTTGNAG RVACG+IG+
Sbjct:   62 MNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRGTSELSKTTGNAGARVACGVIGI 182          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 3.850e-33
Identity = 71/135 (52.59%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE +  PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HG PED+ RH              A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R ACG+IGL
Sbjct:   18 VHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          

HSP 2 Score: 23.0978 bits (48), Expect = 3.850e-33
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAV+ G   V+GT
Sbjct:    1 MVKAVAVVRGDSKVQGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 5.805e-33
Identity = 70/135 (51.85%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+F QE +  PTT++  L+G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH              A  ++ D+Q+ L GP+S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   18 VTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.443e-32
Identity = 68/135 (50.37%), Postives = 80/135 (59.26%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            ++F+QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HG P D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:   18 ITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          

HSP 2 Score: 21.557 bits (44), Expect = 1.443e-32
Identity = 11/16 (68.75%), Postives = 11/16 (68.75%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKG 52
            MVKAVAVL G   V G
Sbjct:    1 MVKAVAVLKGDSPVTG 16          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.443e-32
Identity = 70/135 (51.85%), Postives = 80/135 (59.26%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE +  PTT++  +SG  P    GFH+H  GD TNGC S GPHFNP G  HG    E RH              A  TV DN + L GP S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   18 VIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGI 152          

HSP 2 Score: 25.409 bits (54), Expect = 1.443e-32
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAV+ G   VKGT
Sbjct:    1 MVKAVAVVRGDSNVKGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 3.187e-32
Identity = 69/135 (51.11%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   57 VSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HG PED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:   18 VTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          

HSP 2 Score: 23.0978 bits (48), Expect = 3.187e-32
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAVL G   + GT
Sbjct:    1 MVKAVAVLRGDSKITGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 3.763e-32
Identity = 67/129 (51.94%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   69 QEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            QEG GP  + G + GL  G HGFHVH  GD T GC + G HFNP  K+HG P+DE RH              A   + D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:   25 QEG-GPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.383e-32
Identity = 67/135 (49.63%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:   18 VTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 70/135 (51.85%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHG PED+NRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:   18 VNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.025e-31
Identity = 67/135 (49.63%), Postives = 81/135 (60.00%), Query Frame = 3
Query:   57 VSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 455
            V F QE +  PTT++  ++G       GFH+H  GD TNGC S GPHFNP GK HG P DE RH              A  +V D  + L GP+S+IGR VV+HA  DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:   18 VVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          

HSP 2 Score: 22.7126 bits (47), Expect = 2.025e-31
Identity = 12/17 (70.59%), Postives = 12/17 (70.59%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAVAVL G   V GT
Sbjct:    1 MVKAVAVLRGDAKVGGT 17          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODE_HAECO2.606e-3352.89Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_CANAL3.850e-3352.59Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_PAETN5.805e-3351.85Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_CRYGA1.443e-3250.37Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_NEUCR1.443e-3251.85Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_ASPFU3.187e-3251.11Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_HORSE3.763e-3251.94Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC_CORMI8.383e-3249.63Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC1_DEBHA1.095e-3151.85Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CLAPU2.025e-3149.63Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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