BQ623723

Overview
NameBQ623723
Unique NameBQ623723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:    5 FLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 235
            F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  280 FIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
[Close]
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:    5 FLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 235
            F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  280 FIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
[Close]
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:    5 FLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 235
            F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  279 FIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362
The following BLAST results are available for this feature:
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RD23A_MOUSE1.144e-1243.02UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23A_HUMAN1.144e-1243.02UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN1.144e-1243.02UV excision repair protein RAD23 homolog A OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00814 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00814 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623723 ID=BQ623723; Name=BQ623723; organism=Citrus sinensis; type=EST; length=476bp
TGACTTCCTTCGGCTTATCAATGAACCTGTTCAAGGTGGTGAGGGGAATT
TGGGGGACCAGCTTGCTGGGTTAATGCCACAGTCAATACAAGTCACGCCC
GAAGAACGTGAAGCCATAGAACGTCTTGAGGCAATGGGCTTTGATCGAGC
AATTGTATTGGAGGTGTTCTTTGCCTGCAACAAGAATGAGGAACTTGCTG
CCAACTACCTTTTAGACCATATGCATGAGTTTGAGGATTGATTGAAAGGG
GAATAGAAAAGATTCAAGATGAAAATGATGGTTACTACCTTTGGACGGCA
TTTATTAAAAAATACCTCTAATTAGTTTCTTTCCCTTCTCATTTCTCCTC
GACTTCATTTGTTAAACAAAGTTCAGATATTCATGCTTTGGTATGTGTGG
AGAGTGAACAAGTAATGCAAGATGTAACATTCTTCAACTTCTCATTTAGG
AACCTAATGTTCATGGCAATTAGTTT
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