BQ623725

Overview
NameBQ623725
Unique NameBQ623725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:426..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L P  S  P G
Sbjct:   63 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   ++ D L P  +  P G
Sbjct:   64 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLG 198          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI  G   ++ D + P  S  P G
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLG 139          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L P  S  P G
Sbjct:   65 EAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLG 199          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 59/136 (43.38%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDLE--DKLSPRWSI*PTG 393
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E YR+  G   E  DK+ P  +  P G
Sbjct:   64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLG 198          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 62/139 (44.60%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLSPRWSI*PTG 393
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK+ P  +  P G
Sbjct:   62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 62/139 (44.60%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLSPRWSI*PTG 393
            + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK+ P  +  P G
Sbjct:   62 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG 196          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  NG   + ED L P  S  P G
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NGL--DLEDKLSPRWSI*PTG 393
            E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  NG   + ED L P  S  P G
Sbjct:   65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLG 200          
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLSPRWSI*PTG 393
            E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D + P  S  P G
Sbjct:   67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLG 201          
The following BLAST results are available for this feature:
BLAST of BQ623725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB22_HORVU3.215e-2243.38Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE4.199e-2243.38Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA4.199e-2242.65Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PETSP4.199e-2243.38Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB26_PETSP5.484e-2243.38Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_ORYSJ5.484e-2244.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.484e-2244.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH5.484e-2243.07Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.484e-2243.07Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_PHYPA9.355e-2242.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00816 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00816 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623725 ID=BQ623725; Name=BQ623725; organism=Citrus sinensis; type=EST; length=395bp
GAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGA
TCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCAT
ATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATC
ATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGT
CTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACT
TCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATT
GTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTT
GGAGGACAAGCTTTCACCCAGGTGGTCCATTTGACCCACTGGGAT
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