BQ623728

Overview
NameBQ623728
Unique NameBQ623728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 58/123 (47.15%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    5 KTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDCFRHC 373
            + LD+QTAT LFKL HKYRPETKQ K +RL+                      PV+  G+N VT LVE KKA+LVVIAHDVDPIE+V++LP LCRK G      K + ++G    ++ C   C
Sbjct:   85 QALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTKRP----PVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVC 203          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.678e-21
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 2
Query:    5 KTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGS 340
            KTLDK TAT +FKLL+KYRPET   K QRLV                    +   ++YGLNHV  L+E KKAKLV+IA DVDPIE+VV+LP LC+K G      K + ++G+
Sbjct:   80 KTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYN---VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGT 188          

HSP 2 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  195 LASLKRRRQN*LLLPTMLIPLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFNRNAD-LRRAWGGQKLGAKSAAALPLR 521
            +A ++ ++   +L+ + + P+  +   P   + + VPY IVK+KARLG ++H+KTA+V+A+T V +ED+             F+   D  RR WGG  +G K+ A L  R
Sbjct:  140 VALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKR 249          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_PIG (60S ribosomal protein L7a (Fragment) OS=Sus scrofa GN=RPL7A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   20 QTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            QTAT L K+ HKYRPETKQ K QRL+        X             PVL  G+N VT LVE KKA+LVVIAHDVDPIE+VV+LP LCRK G      K + ++G    ++ C
Sbjct:    1 QTATQLLKVAHKYRPETKQEKKQRLLARAEKKAAXKGDVPTKRP----PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTC 110          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    8 TLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQE 355
            TLD+ TA   FKL +KYRPET   K +RL                     +   ++YGLNHV  L+E KKAKLV+IA+DVDPIE+VV+LP LC+K G      K + ++G+   Q+
Sbjct:   81 TLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAIAEGKSKQDASPKPYA---VKYGLNHVVSLIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIIKGKARLGTLVNQK 193          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL8A_YEAST (60S ribosomal protein L8-A OS=Saccharomyces cerevisiae GN=RPL8A PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    8 TLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQE 355
            TLD+ TA   FKL +KYRPET   K +RL                     +   ++YGLNHV  L+E KKAKLV+IA+DVDPIE+VV+LP LC+K G      K + ++G+   Q+
Sbjct:   81 TLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYA---VKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK 193          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_DICDI (60S ribosomal protein L7a OS=Dictyostelium discoideum GN=rpl7a PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.330e-18
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIG 337
            T+  DK TA  LFKLL KYRPE    K  RL+                        L +G++ VT L+EKKKAKLVVIAHDVDP+E+V++LPTLCR+        K + ++G
Sbjct:   99 TRVFDKNTAVHLFKLLDKYRPEEASVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLG 210          

HSP 2 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  165 QFLNMDLTTSLASLKRRRQN*LLLPTMLIPLRSLCGYPPSAESLDVPYVIVKSKARLGALVHKKTASVIALTSVNKEDQKXXXXXXXXXXXXFNRNADLRRAWGGQKLGAKSAAALPLR 521
            Q L   + +    +++++   +++   + P+  +   P     +DVPY IVKSK+RLG LVH + AS +ALT VN  D              FN N++ R+ WGG  L   + A L  R
Sbjct:  153 QHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKR 271          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 51/120 (42.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            ++TLDK TA  LFKLL KYRPE+  AK  RL                         +  G N VT L+E+KKA+LVVIAHDVDP+E+V++LP LCRK G      K + ++G    ++ C
Sbjct:   89 SQTLDKTTAVKLFKLLEKYRPESPLAKKLRL----KKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTC 204          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.507e-17
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 2
Query:    2 TKTLDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGSFGAQEDC 361
            T+TLDK TA  + K+L KYRPE   A+ QRL                         L  G+N V  +VE+KKA+LV+IAHDVDPIE+VV+LP LCRK G      K + ++G+   ++ C
Sbjct:   90 TQTLDKPTAQQVMKMLEKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQ----LRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLVYRKTC 205          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_CAEEL (60S ribosomal protein L7a OS=Caenorhabditis elegans GN=rpl-7A PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   11 LDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGPVLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIGS 340
            LD Q+A   FKLL KYRPE+ +AK  RL                         + +G+N +T LVE ++A+LV+IAHDV+P+EIV+ LP LCRK+       K +  +G+
Sbjct:   88 LDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPN----TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGT 193          
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Match: RL7A_ENCCU (60S ribosomal protein L7a OS=Encephalitozoon cuniculi GN=RPL7A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 44/112 (39.29%), Postives = 58/112 (51.79%), Query Frame = 2
Query:   11 LDKQTATTLFKLLHKYRPETKQAKHQRLVXXXXXXXXXXXXXXXXXXXXSGP---VLEYGLNHVTGLVEKKKAKLVVIAHDVDPIEIVVWLPTLCRKFGCSLRYCKEQGKIG 337
            L +       +L  KYRPE KQ K  RL                      GP   ++++GL HVT L+E KKAKLV+I+  VDPIE+V++LPTLCRK G S    +    +G
Sbjct:   39 LSEHDTKKFVELFMKYRPENKQEKRIRL---------------QSEDPKKGPKPILVKFGLKHVTNLIETKKAKLVLISASVDPIEVVIFLPTLCRKMGVSYAIVENSTLLG 135          
The following BLAST results are available for this feature:
BLAST of BQ623728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_ICTPU1.982e-2247.1560S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL8_SCHPO1.678e-2149.1160S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL7A_PIG1.855e-2050.0060S ribosomal protein L7a (Fragment) OS=Sus scrofa... [more]
RL8B_YEAST1.018e-1843.1060S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]
RL8A_YEAST1.018e-1843.1060S ribosomal protein L8-A OS=Saccharomyces cerevi... [more]
RL7A_DICDI1.330e-1843.7560S ribosomal protein L7a OS=Dictyostelium discoid... [more]
RL7A_DROME1.920e-1742.5060S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL7A_ANOGA2.507e-1741.6760S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL7A_CAEEL5.780e-1439.0960S ribosomal protein L7a OS=Caenorhabditis elegan... [more]
RL7A_ENCCU3.747e-1339.2960S ribosomal protein L7a OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623728 ID=BQ623728; Name=BQ623728; organism=Citrus sinensis; type=EST; length=522bp
TACAAAGACTCTGGACAAGCAAACTGCAACCACTTTGTTCAAGCTGTTGC
ACAAATACAGACCAGAGACCAAGCAAGCCAAGCACCAAAGACTCGTTGCT
GCTGCCAAGGCTGCTGCTGAGGACAAGAAGGGTGAGAAGAAAGCAGAGGC
TCCCAAGTCTGGACCAGTTCTTGAATATGGACTTAACCACGTCACTGGCC
TCGTTGAAAAGAAGAAGGCAAAATTAGTTGTTATTGCCCACGATGTTGAT
CCCATTGAGATCGTTGTGTGGTTACCCACCCTCTGCCGAAAGTTTGGATG
TTCCCTACGTTATTGTAAAGAGCAAGGCAAGATTGGGAGCTTTGGTGCAC
AAGAAGACTGCTTCCGTCATTGCCCTTACGAGTGTGAATAAGGAGGACCA
AAAAGATTTGACGACCCTCACTTCTCTTGCCCTCGATACGTTCAACAGAA
ATGCTGATCTCAGAAGAGCTTGGGGAGGACAAAAGCTTGGAGCTAAATCT
GCTGCAGCTCTTCCTTTACGAG
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