BQ623742

Overview
NameBQ623742
Unique NameBQ623742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4610 contig Csv1_Contig4610:676..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.369e-44
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 306
            TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATI +TGTGINPARSLG AV+YN  KAW DQWIFWVGPFIGAAIAA YHQ ILRASA +  GSF+S++
Sbjct:  186 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA-RGYGSFRSNA 286          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.005e-43
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKS 300
            TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATI +TGTGINPARSLGAAVIYN+ KAW D WIFWVGP IGAAIAA YHQ++LRASA+K LGS  S
Sbjct:  189 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSSSS 287          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.710e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  192 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.710e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  191 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.539e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ AW+D WIFWVGPF+GAA+AA YHQ I+RA   K+
Sbjct:  194 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKS 287          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ +WDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  192 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYN+  AWDD WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  193 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 75/94 (79.79%), Postives = 85/94 (90.43%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYN++ AW+D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  194 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 7.885e-40
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 306
            TVFSATDPKR ARDS +PVL PLPIGFAVF+VHLATI +TGTGINPARSLGAAV+YN+  AW D WIFWVGP IGA +AA YH+ +LR  A+KAL SF+S+S
Sbjct:  186 TVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKALSSFRSTS 287          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.885e-40
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYN++ AW D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  197 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290          
The following BLAST results are available for this feature:
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PIP24_ORYSJ2.369e-4484.31Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ2.005e-4386.00Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH2.710e-4079.79Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.710e-4079.79Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_ORYSJ3.539e-4079.79Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP14_ARATH6.037e-4078.72Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ6.037e-4079.79Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_MAIZE6.037e-4079.79Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP27_ORYSJ7.885e-4074.51Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP13_MAIZE7.885e-4079.79Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00833 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00833 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623742 ID=BQ623742; Name=BQ623742; organism=Citrus sinensis; type=EST; length=518bp
ACTGTTTTCTCCGCCACTGATCCCAAGAGAAATGCTAGGGACTCCCATGT
TCCTGTCTTGGCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACT
TGGCTACGATCTCTGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTG
GGAGCTGCGGTGATTTACAACAAGGAGAAGGCTTGGGATGATCAATGGAT
CTTCTGGGTTGGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACC
AATTCATCCTCAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGC
TCCTCCAACATTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAA
TGGCTGTCAAGCGGCTTCGTGACTATGGAATTTGTACATTGTTTTATTTG
CATCAGTATTTAGTAGAGCTGGTGTAGATCCCGCAGCACTTTGTGTGTGT
CTTTTGTTTACCTGAGGACACTCGTTTTTAGTGTGCCCCAAAAATTATTA
TTTGCTTTGCATTCCTTC
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