BQ623742

Overview
NameBQ623742
Unique NameBQ623742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.345e-39
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+I+NK+ AWDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  191 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKS 284          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.757e-39
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ +WDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  191 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.757e-39
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYNK+ +WDD W+FWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  191 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKS 284          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.996e-39
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRA 267
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IYN E AW+D WIFWVGP IGAA+AA YHQ I+RA
Sbjct:  192 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.942e-38
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR ARDSHVP+LAPLPIGFAVF+VHLAT+ +TGTGINPARSLGAAVIYN+  AW D WIFWVGPFIGAA+AA YHQ I+RA   K+
Sbjct:  192 TVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 285          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.537e-38
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KRNARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA++YN+  AW D WIFWVGPFIGAA+AA YH  ++RA   K+
Sbjct:  193 TVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKS 286          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.313e-38
Identity = 71/94 (75.53%), Postives = 84/94 (89.36%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+++NK+  W+D WIFWVGPFIGAA+AA YHQ ++RA   K+
Sbjct:  195 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 288          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.313e-38
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA++YN+  AW+D WIFWVGPFIGAA+AA YH  I+RA   K+
Sbjct:  193 TVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKS 286          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.178e-35
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKA 282
            TVFSATD KR ARDSHVP LAPLPIGFAVF+VHLATI +TGTGINPARSLGAA+IY+    W   WIFWVGPF GAA+AA YHQ +LRA   K+
Sbjct:  199 TVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKS 292          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVI--YNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGS 291
            TVFSATDPKR ARDSHVPVLAPLPIG AV +VHLATI +TGTGINPARSLG A++      KAW   WIFWVGPF GAA A  YH +ILR +A+KA  S
Sbjct:  174 TVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFAS 272          
The following BLAST results are available for this feature:
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PIP12_ARATH1.345e-3977.66Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA1.757e-3977.66Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH1.757e-3977.66Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP1_SOLLC2.996e-3983.15Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_MAIZE1.942e-3878.72Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP13_ORYSJ2.537e-3876.60Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP2_PEA3.313e-3875.53Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP15_MAIZE3.313e-3876.60Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP16_MAIZE1.178e-3574.47Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ8.444e-3470.71Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00833 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00833 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623742 ID=BQ623742; Name=BQ623742; organism=Citrus sinensis; type=EST; length=518bp
ACTGTTTTCTCCGCCACTGATCCCAAGAGAAATGCTAGGGACTCCCATGT
TCCTGTCTTGGCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACT
TGGCTACGATCTCTGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTG
GGAGCTGCGGTGATTTACAACAAGGAGAAGGCTTGGGATGATCAATGGAT
CTTCTGGGTTGGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACC
AATTCATCCTCAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGC
TCCTCCAACATTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAA
TGGCTGTCAAGCGGCTTCGTGACTATGGAATTTGTACATTGTTTTATTTG
CATCAGTATTTAGTAGAGCTGGTGTAGATCCCGCAGCACTTTGTGTGTGT
CTTTTGTTTACCTGAGGACACTCGTTTTTAGTGTGCCCCAAAAATTATTA
TTTGCTTTGCATTCCTTC
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