BQ623742

Overview
NameBQ623742
Unique NameBQ623742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4610 contig Csv1_Contig4610:676..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 43/102 (42.16%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSN 309
            V + TD +R+     VP    L IG +V + HL  I  TG G+NPARS G+AV+    K +   WIFWVGP IG A AA  + FIL    S      K  +N
Sbjct:  157 VVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFILAPRTSDLTDRMKVWTN 251          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFI 258
            T+F++ D KR    + V     L IGF+V + HL  I+ TG  +NPARS G AVI      W++ WI+WVGP IGA +A   ++++
Sbjct:  173 TIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFI 258
            T+F++ D KR    + V     L IGF+V + HL  I+ TG  +NPARS G AVI      W++ WI+WVGP IGA +A   ++++
Sbjct:  176 TIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAP-LPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFIL 261
            +FS+TD +R +     PV +P L IG +V + HL  I  TG  +NPARS G AV+ N+       W+FWVGP +GAA+AA  + ++L
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAAVAAILYFYLL 225          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFI 258
            T+F++ D KR    + V     L IGF+V + HL  I+ TG  +NPARS G AVI      W++ WI+WVGP IGA +A   ++++
Sbjct:  173 TIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 TVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFI 258
            T+F++ D KR    + V     L IGF+V + HL  I+ TG  +NPARS G AVI      W++ WI+WVGP IGA +A   ++++
Sbjct:  173 TIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFIL 261
            +F++TD +R       P    L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA + +  + ++L
Sbjct:  145 IFASTDERRGEN----PGTPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAILGSLLYNYVL 223          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFIL 261
            +F++TD +R       P L+   IGF+V + HL  I  TG  +NPARSL  A++  K   +DD W+FW+GP +GA +A+  + ++L
Sbjct:  145 IFASTDERRGDNVG-TPALS---IGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAP-LPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASA 273
            +FS+TD +R +     PV +P L IG +V + HL  I  TG  +NPARS G AV+ N+       W+FWVGP +GA +AA  + ++L  S+
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAVLAAILYFYLLFPSS 229          
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    4 VFSATDPKRNARDSHVPVLAP-LPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASA 273
            +FS+TD +R +     PV +P L IG +V + HL  I  TG  +NPARS G AV+ N+       W+FWVGP +GA +AA  + ++L  S+
Sbjct:  146 IFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAMLAAILYFYLLFPSS 229          
The following BLAST results are available for this feature:
BLAST of BQ623742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AQPA_RANES3.122e-1242.16Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_RAT3.122e-1241.86Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL4.078e-1241.86Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP5_PIG5.326e-1243.68Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP4_HUMAN5.326e-1241.86Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME5.326e-1241.86Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP2_HUMAN5.326e-1239.53Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
AQP2_BOVIN1.186e-1139.53Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQP5_MOUSE1.550e-1141.76Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_RAT2.024e-1141.76Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00833 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00833 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623742 ID=BQ623742; Name=BQ623742; organism=Citrus sinensis; type=EST; length=518bp
ACTGTTTTCTCCGCCACTGATCCCAAGAGAAATGCTAGGGACTCCCATGT
TCCTGTCTTGGCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACT
TGGCTACGATCTCTGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTG
GGAGCTGCGGTGATTTACAACAAGGAGAAGGCTTGGGATGATCAATGGAT
CTTCTGGGTTGGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACC
AATTCATCCTCAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGC
TCCTCCAACATTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAA
TGGCTGTCAAGCGGCTTCGTGACTATGGAATTTGTACATTGTTTTATTTG
CATCAGTATTTAGTAGAGCTGGTGTAGATCCCGCAGCACTTTGTGTGTGT
CTTTTGTTTACCTGAGGACACTCGTTTTTAGTGTGCCCCAAAAATTATTA
TTTGCTTTGCATTCCTTC
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