BQ623744 | Citrus Genome Database

Overview


Name	BQ623744
Unique Name	BQ623744
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	597

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10244	contig	Csv1_Contig10244:345..941.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.345e-72
Identity = 141/200 (70.50%), Postives = 156/200 (78.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   65 FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSY 261

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.345e-72
Identity = 138/200 (69.00%), Postives = 154/200 (77.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT                 +NAW +
Sbjct:   62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAF 259

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.345e-72
Identity = 140/200 (70.00%), Postives = 153/200 (76.50%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW +
Sbjct:   61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAF 258

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.345e-72
Identity = 138/200 (69.00%), Postives = 154/200 (77.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT                 +NAW +
Sbjct:   62 FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAF 259

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 8.286e-72
Identity = 142/200 (71.00%), Postives = 155/200 (77.50%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI G P +GE  D +YPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   70 FSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAY 266

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 8.286e-72
Identity = 142/200 (71.00%), Postives = 156/200 (78.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   63 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 259

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 8.286e-72
Identity = 142/199 (71.36%), Postives = 154/199 (77.39%), Query Frame = 1

Query:    4 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 253

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 8.286e-72
Identity = 141/200 (70.50%), Postives = 154/200 (77.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH  WAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+RI G P +GE  D +YPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:    2 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 198

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.082e-71
Identity = 139/200 (69.50%), Postives = 154/200 (77.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+   QV+LMG +EG+R+ G P +GE  D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   74 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAY 270

[Close]

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.082e-71
Identity = 141/200 (70.50%), Postives = 156/200 (78.00%), Query Frame = 1

Query:    1 FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTXXXXXXXXXXXXXXXCCHNAWVY 597
            FS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G P +GE  D LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT                 +NAW Y
Sbjct:   61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP-LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 257

The following BLAST results are available for this feature:

BLAST of BQ623744 vs. ExPASy Swiss-Prot

BLAST of BQ623744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85


Match Name	E-value	Identity	Description
CB22_PEA	6.345e-72	70.50	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB22_ARATH	6.345e-72	69.00	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_SINAL	6.345e-72	70.00	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB21_ARATH	6.345e-72	69.00	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB2B_PINSY	8.286e-72	71.00	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB24_TOBAC	8.286e-72	71.00	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB22_ORYSJ	8.286e-72	71.36	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB22_CUCSA	8.286e-72	70.50	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB2A_PINSY	1.082e-71	69.50	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB22_TOBAC	1.082e-71	70.50	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00835 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00835 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623744 ID=BQ623744; Name=BQ623744; organism=Citrus sinensis; type=EST; length=597bp
TTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTA
TGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGA
ACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTA
GGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAA
GGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCC
TTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCT
GTCCTGGGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTAT
CAATGGCCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCC
AATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAA
CTCAAGGTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTT
TGGGTTCTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCCTTGGAAAAC
CTCCTGGACCACCTTGAAAACCCTGTTGCCACAATGCTTGGGTCTAT